Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG26.1% 343.1 / 17.6 160T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (41/75);  new base G (41/0);  total (85/75)
Fisher's exact test for biased strand distribution p-value = 6.47e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 165 total aligned reads displayed.

CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568366‑4568643
                                                                                                                                           |                                                                                                                                             
cagGGGCCAGACTGACATCGGCCTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Ta                                                                                                                                              >  1:831080/1‑140 (MQ=255)
   gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑Gaaaa                                                                                                                                           >  1:2133200/1‑140 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTg                                                                                                                                    <  1:2205461/140‑1 (MQ=255)
           cTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTgg                                                                                                                                   <  1:2094835/140‑1 (MQ=255)
             gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCa                                                                                                                                 <  2:688284/140‑1 (MQ=255)
             gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCa                                                                                                                                 <  2:528809/140‑1 (MQ=255)
             gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCa                                                                                                                                 <  1:2684/140‑1 (MQ=255)
             gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCa                                                                                                                                 <  2:1050665/140‑1 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAGAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCaa                                                                                                                                >  2:2380823/1‑139 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTgggaca                                                                                                                               >  1:466353/1‑136 (MQ=255)
                   ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑aacaa                                                                                                                          <  2:1185004/140‑1 (MQ=255)
                    gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑aacaaa                                                                                                                         >  1:1637257/1‑140 (MQ=255)
                     cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑aacaaac                                                                                                                        <  1:101609/140‑1 (MQ=255)
                     cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑aacaaac                                                                                                                        >  1:546250/1‑140 (MQ=255)
                     cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑aacaaac                                                                                                                        <  1:905282/140‑1 (MQ=255)
                          aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCAT‑AACAAACAACTc                                                                                                                   >  1:2143556/1‑140 (MQ=255)
                           aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTcc                                                                                                                  <  2:37897/140‑1 (MQ=255)
                                cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGAGGCAT‑AAAAAAAAACCCCTTGTc                                                                                                             >  2:925601/1‑140 (MQ=255)
                                cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAAAGGCAT‑AACAAACAAACCCTTGTc                                                                                                             >  2:101609/1‑140 (MQ=255)
                                  agccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCg                                                                                                           <  1:598825/138‑1 (MQ=255)
                                   aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCgg                                                                                                          <  1:2185502/140‑1 (MQ=255)
                                    ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGga                                                                                                         <  1:508135/140‑1 (MQ=255)
                                    ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGga                                                                                                         <  2:2143556/140‑1 (MQ=255)
                                     cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGgag                                                                                                        <  1:1036117/140‑1 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAaacaac                                                                                                                     >  1:682158/1‑125 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGaa                                                                                                      <  2:1606966/140‑1 (MQ=255)
                                        aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAc                                                                                                     <  1:1642641/140‑1 (MQ=255)
                                         ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAACAACTCCTTTGCCGGAGAAc‑c                                                                                                   >  1:417478/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCGT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACg                                                                                             >  1:415440/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAAAGGCAT‑AAAAAAAAAATCCTTTTCCGGAGAAA‑CCCCAcc                                                                                             >  2:598825/1‑139 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAATGGGAA‑AACAAAAAAATCCTTGTCCCGAGAAC‑CCCAACggg                                                                                           >  1:1634111/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACgggg                                                                                          >  1:940528/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACgggg                                                                                          >  1:2269454/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACgggg                                                                                          >  1:1407137/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AAAAAAAAACCCCTTGTCCGGAGAAC‑CCCCACgggg                                                                                          >  2:1924638/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGACA‑AACAAAAAACTCCTTGTCCGGAGAAC‑CCCCACgggg                                                                                          >  2:1496238/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGA‑TAAAAAAAAGTGGGCT‑AAAAAAAAACTCCTTTTCCGGGGAAG‑CCCAACcggg                                                                                          >  1:1204128/1‑140 (MQ=255)
                                                   cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGa                                                                                         <  2:1797896/140‑1 (MQ=255)
                                                   cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCGT‑AAAAAACAACCCCCTGTCCGGAGAAC‑CCCAACggggg                                                                                         >  2:869556/1‑139 (MQ=255)
                                                    aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGaa                                                                                        >  1:2077402/1‑140 (MQ=255)
                                                    aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCAT‑AAAAAAAAAATCCTTGTCCGGAGAAC‑CCCAACggggga                                                                                        >  2:1307372/1‑138 (MQ=255)
                                                    aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAAAGGCGT‑AACAAACAAATCCCTTTCCGGAGAACACCAAACGGGGa                                                                                         >  2:2424852/1‑140 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAGACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACg                                                                                    <  2:1228417/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACg                                                                                    <  2:2046252/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACg                                                                                    <  1:1238211/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACg                                                                                    <  2:940528/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAAAAACTCCTTTTCCGGAGAAC‑CCCCAAGGGGAAAACGaa                                                                                  >  1:1486449/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AAAAAACAACCCCTTGTCCGGGGAAA‑CCCCACGGGGGAAAAGaa                                                                                  >  2:1861539/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGAGGCAT‑AACAAAAAACTCCCTTTCCCGAGAAC‑CCCCACGGGGGAAACGaaa                                                                                 >  2:1003948/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AAAAAACAACTCCTTGTCCGGAGAAC‑CCCCACGGGGGAAAAGaaa                                                                                 >  2:1459287/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGAGGCAT‑AAAAAAAAAAACCTTGTCCCGAGAAC‑CCCAAAGGGGGAAACGaaa                                                                                 >  2:663402/1‑140 (MQ=255)
                                                               gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCa                                                                             <  1:1307372/140‑1 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAAATCaa                                                                            >  1:1917445/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AAAAAAAAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCaa                                                                            >  1:295996/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACAGGGCCT‑TACAAACAACTCCCTTTCCGGAGGAA‑CCCCACGGGGGAAAAGAAATTCaa                                                                            >  2:91319/1‑140 (MQ=255)
                                                                 tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAAt                                                                           <  1:694425/140‑1 (MQ=255)
                                                                   cGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATAc                                                                         <  1:763666/140‑1 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGGCT‑AAAAAAAAACTCCTTGTCCGGAGAAA‑CCCAACGGGGGAAAAGAAAATCAAAAcc                                                                        >  2:2184260/1‑140 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACAAGGCAT‑AAAAAACAACTCCCTGTCCGGAGAAC‑CCCAACGGGGGAAAAGAAAATCAATAcc                                                                        >  2:2028889/1‑140 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCATAAAAAAAAAACCCCTTTTCGGGGAAAC‑CCCACCGGGGAAAAGAAAATTAAAAAc                                                                         >  2:442207/1‑140 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCCT‑AACAAAAAACTCCTTGTCCCGAGAAC‑CCCCACGGGGAAAACGAAAATTAAAAccc                                                                       >  2:1954078/1‑139 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCAT‑AAAAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGGAAACGAAAATCAATAccc                                                                       >  2:2271645/1‑139 (MQ=255)
                                                                      cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGt                                                                      >  1:378034/1‑140 (MQ=255)
                                                                      cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGt                                                                      <  1:2424852/140‑1 (MQ=255)
                                                                         cAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCgg                                                                   <  1:1459287/140‑1 (MQ=255)
                                                                                 cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg                                                           <  1:442207/140‑1 (MQ=255)
                                                                                    caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGGAT‑AAAAAAAAAACCCTTTTCCGGAGAAA‑CCCAAAGGGGGAAAAGAAAATCAAAAACGTCGGGAAAGAAGaaa                                                        >  2:2236804/1‑140 (MQ=255)
                                                                                      aaGTCATACCAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGGGGCAT‑AACAAACAACCCCCTTTCCGGAGAAA‑CCCCACGGGGGAAAAGAAAATTAATAACGTCGGGAATGACGaaaag                                                      >  2:559155/1‑138 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGGAT‑AACAAACAACTCCTTTTCCGGAGAAC‑CCCAACGGGGAAAAAGAAATTCAAAACCCTCGGGAATGACGAAAgg                                                      >  1:557489/1‑140 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  1:1732208/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCAT‑AAAAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGGAAACGAAATTCAATACCGTCGGGAATGACGAAAgg                                                      >  1:1054957/1‑140 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAAGGGCGT‑AAAAAAAAACACCTTTTCCGGAGAAA‑CCCAAAGGGGGAAAAGAAATTTAAAAACGTCGGGAAAGAAGaaaag                                                      >  2:1171690/1‑138 (MQ=255)
                                                                                       aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAAAAACTCCTTGTCCGGAGAAA‑CCCCACGGGGAAAAAGAAATTCAAAACCGTCGGGAATGACGAAAAGc                                                     >  2:2140355/1‑140 (MQ=255)
                                                                                         tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg                                                   <  2:777028/140‑1 (MQ=255)
                                                                                           aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGt                                                 <  1:1956362/140‑1 (MQ=255)
                                                                                              cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                              <  2:2405489/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCGT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACAGTCGGTAATGACGAAAGGCAGGTgaga                                             <  2:415440/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                             <  2:2104839/140‑1 (MQ=255)
                                                                                                   tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAAAGTGGCAT‑AAAAAACAACTCCTTGTCCGGAGAAC‑CCCCAAGGGGGAAAAGAAAATTAATAACGTCGGGAATGAAGAAAGGCAGGGGGGAAagg                                         >  2:1441067/1‑140 (MQ=255)
                                                                                                   tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGGGGCAT‑AAAAAAAAACTCCTTGTCCGGAGAAC‑CCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAGGCAGGGGAGAAgat                                         >  2:137715/1‑138 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:2184260/140‑1 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:1184821/140‑1 (MQ=255)
                                                                                                           aTCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AAAAAACAAATCCTTGTCCGGAGAAC‑CCCCACGGGGGAAAAGAAAATCAATACCGTCGGGAATGAAGAAAAGCAGGGGAGAAGGGCAACgaga                                 >  2:185907/1‑140 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  2:1165062/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                                <  1:75613/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAAAAACACCTTGTCCGGAGAAC‑CCCCACGGGGGAAAAGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGAGAAAGGGAACgagaa                                >  2:75613/1‑139 (MQ=255)
                                                                                                             cGGGAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAACGAGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCCACGGGGAAAAAGAAAATCAATACCGTCGGTAATGACGAAAGGCAGGGGAGAAGGGCAACgagaat                               >  2:1568513/1‑138 (MQ=255)
                                                                                                              gggAAAAACAGCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AAAAAAAAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAAAGAAAATTAATACCGTCGGGAATGACGAAAAGCAGGGGGGAAAGGGAACGAGACTg                              >  2:1569392/1‑140 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  1:2105223/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  2:1637257/140‑1 (MQ=255)
                                                                                                                      cAGCGTGGCGGCATGGCGGGATAAAAAAAC‑TGGGAT‑AACAAACAAAACCTTGTGCGGGGAAC‑CCCAACGGGGAAAAAAAAATTAAAAAACGCCGGGGATAACGCAAAAGAGGTGGGAAGAGGAACGAGACCGCAAAAGTa                      >  2:682457/1‑140 (MQ=255)
                                                                                                                      cAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AAAAAACAACTCCTTGTCCGGAGAAA‑CCCCACGGGGGAAACGAAATTCAAAACCGTCGGGAATGACGAAAGGGAGGGGGGAAGGGCAACGAGACTGCaaaagaa                      >  2:710767/1‑136 (MQ=255)
                                                                                                                       aGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:2028889/140‑1 (MQ=255)
                                                                                                                        gCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                    <  1:925601/140‑1 (MQ=255)
                                                                                                                        gCGTGGCGGCATGGCGGG‑GAAAAAAAAGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCCACGGGGAAAAAGAAATTCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAAAGTaat                    >  2:1622180/1‑138 (MQ=255)
                                                                                                                                  aTGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg          <  2:2133200/140‑1 (MQ=255)
                                                                                                                                    ggCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  1:710767/140‑1 (MQ=255)
                                                                                                                                    ggCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  1:225642/140‑1 (MQ=255)
                                                                                                                                    ggCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:466353/140‑1 (MQ=255)
                                                                                                                                    ggCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:378034/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                             
CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGG‑TAAAAAAACGTGGCAT‑AACAAACAACTCCTTGTCCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568366‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑