BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	945,728	C→A	intergenic (‑171/‑143)	ycaC ← / → ycaD	putative hydrolase/putative transporter YcaD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	945,728	0	C	A	100.0%	420.4 / NA	119	intergenic (‑171/‑143)	ycaC/ycaD	putative hydrolase/putative transporter YcaD
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (52/67); total (52/67)

Only 100 of 127 total aligned reads displayed.

GAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGT  >  NC_000913/945591‑945862

gAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTaataat                                                                                                                                      >  1:1136313/1‑140 (MQ=255)

gAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTaataat                                                                                                                                      >  1:2405206/1‑140 (MQ=255)

     cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAGATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCtt                                                                                                                                 <  1:1188866/140‑1 (MQ=255)

     cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCtt                                                                                                                                 <  2:619528/140‑1 (MQ=255)

     cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCtt                                                                                                                                 <  2:422083/140‑1 (MQ=255)

     cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCtt                                                                                                                                 <  2:317583/140‑1 (MQ=255)

     cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCtt                                                                                                                                 <  2:2252274/140‑1 (MQ=255)

     cGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCtt                                                                                                                                 <  1:680856/140‑1 (MQ=255)

       aTCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCa                                                                                                                               >  1:1794889/1‑140 (MQ=255)

       aTCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCa                                                                                                                               >  2:310202/1‑140 (MQ=255)

       aTCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCa                                                                                                                               >  1:251375/1‑140 (MQ=255)

       aTCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCa                                                                                                                               >  1:730961/1‑140 (MQ=255)

        tCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAg                                                                                                                              >  1:1027601/1‑140 (MQ=255)

           gACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCAt                                                                                                                           <  1:804073/140‑1 (MQ=255)

           gACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCAt                                                                                                                           <  2:1247371/140‑1 (MQ=255)

            aCGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCAtt                                                                                                                          <  2:1637975/140‑1 (MQ=255)

            aCGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCAtt                                                                                                                          <  2:1964696/140‑1 (MQ=255)

            aCGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCAtt                                                                                                                          <  2:967955/140‑1 (MQ=255)

             cgcgATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCTTGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTa                                                                                                                         <  1:570233/140‑1 (MQ=255)

              gcgATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAg                                                                                                                        <  1:2061857/140‑1 (MQ=255)

              gcgATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAg                                                                                                                        <  2:730961/140‑1 (MQ=255)

                gATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCg                                                                                                                      <  2:1027601/140‑1 (MQ=255)

                 aTGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTaataat                                                                                                                                      >  2:250889/1‑123 (MQ=255)

                 aTGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGt                                                                                                                     >  2:2271912/1‑140 (MQ=255)

                      ttGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                <  1:103149/140‑1 (MQ=255)

                      ttGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                <  2:2405206/140‑1 (MQ=255)

                      ttGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                <  2:1162548/140‑1 (MQ=255)

                      ttGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                <  1:967035/140‑1 (MQ=255)

                      ttGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                <  1:2271912/140‑1 (MQ=255)

                      ttGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                >  1:2256801/1‑140 (MQ=255)

                        gCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaat                                                                                                              >  1:1683992/1‑140 (MQ=255)

                        gCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaat                                                                                                              >  2:1071888/1‑140 (MQ=255)

                        gCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaat                                                                                                              >  1:1175683/1‑140 (MQ=255)

                        gCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaat                                                                                                              <  1:1071888/140‑1 (MQ=255)

                         ctctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaatg                                                                                                             >  1:739759/1‑140 (MQ=255)

                         ctctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaatg                                                                                                             >  1:1734418/1‑140 (MQ=255)

                         ctctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatgaatg                                                                                                             >  1:1914922/1‑140 (MQ=255)

                         ctctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                >  2:967394/1‑137 (MQ=255)

                           ctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAg                                                                                                           <  2:252978/140‑1 (MQ=255)

                           ctGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAg                                                                                                           <  1:1573571/140‑1 (MQ=255)

                              aaaGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTaa                                                                                                        <  2:739759/140‑1 (MQ=255)

                                 gCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAatat                                                                                                     <  2:2302920/140‑1 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                <  2:1428926/127‑1 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTatga                                                                                                                >  1:1428926/1‑127 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa                                                                                                   <  1:1943332/140‑1 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa                                                                                                   <  2:611385/140‑1 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa                                                                                                   >  1:2081093/1‑140 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa                                                                                                   <  1:231436/140‑1 (MQ=255)

                                   aTAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATaa                                                                                                   >  1:611385/1‑140 (MQ=255)

                                            aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAg                                                                                                           >  1:1708530/1‑123 (MQ=255)

                                            aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataat                                                                                          >  1:706080/1‑140 (MQ=255)

                                            aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataat                                                                                          >  2:2333073/1‑140 (MQ=255)

                                            aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataat                                                                                          >  1:749975/1‑140 (MQ=255)

                                            aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataat                                                                                          >  2:1422304/1‑140 (MQ=255)

                                            aaaTATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGCGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGataat                                                                                          >  1:572714/1‑140 (MQ=255)

                                              atatGATTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTAAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAc                                                                                        <  2:372717/140‑1 (MQ=255)

                                              atatGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCAATAATAc                                                                                        <  2:750159/140‑1 (MQ=255)

                                              atatGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGCGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAc                                                                                        <  2:572714/140‑1 (MQ=255)

                                               tatGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAcc                                                                                       >  2:1583211/1‑140 (MQ=255)

                                                 tGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAccgc                                                                                     <  1:1583211/140‑1 (MQ=255)

                                                 tGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAccgc                                                                                     <  2:1734418/140‑1 (MQ=255)

                                                 tGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAccgc                                                                                     <  1:1049886/140‑1 (MQ=255)

                                                 tGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATAccgc                                                                                     <  2:1914922/140‑1 (MQ=255)

                                                       tGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTgg                                                                               >  1:2262376/1‑140 (MQ=255)

                                                       tGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTgg                                                                               >  2:680076/1‑140 (MQ=255)

                                                       tGCTGTGACCATAAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTgg                                                                               <  1:680076/140‑1 (MQ=255)

                                                         cTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGa                                                                             >  1:1386286/1‑140 (MQ=255)

                                                                cATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATcgcg                                                                      <  1:189819/140‑1 (MQ=255)

                                                                      ttttttCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTAtttt                                                                <  1:124080/139‑1 (MQ=255)

                                                                          tttgACTGAACGAAGCGTATGAAATTTGTCTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCAcc                                                            <  1:462986/137‑1 (MQ=255)

                                                                                  aaCGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACa                                                    <  2:224465/140‑1 (MQ=255)

                                                                                         cGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGtttt                                             >  1:470639/1‑140 (MQ=255)

                                                                                            aTGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTgg                                          >  2:1542541/1‑140 (MQ=255)

                                                                                            aTGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTgg                                          >  1:287221/1‑140 (MQ=255)

                                                                                             tGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGc                                         >  1:469620/1‑140 (MQ=255)

                                                                                              gAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCg                                        <  1:310202/140‑1 (MQ=255)

                                                                                               aaaTTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCgg                                       <  1:369723/140‑1 (MQ=255)

                                                                                                 aTTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTgg                                          <  2:1623825/135‑1 (MQ=255)

                                                                                                   ttGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGc                                   >  2:845276/1‑140 (MQ=255)

                                                                                                     gtgtTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTgg                                          >  1:1201248/1‑131 (MQ=255)

                                                                                                     gtgtTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTgg                                          <  2:1201248/131‑1 (MQ=255)

                                                                                                      tgtTAGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCatg                                >  1:156419/1‑140 (MQ=255)

                                                                                                          aGTTCAATAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATgc                            >  2:607612/1‑140 (MQ=255)

                                                                                                               aaTAAAAACAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATg                       <  2:1967758/140‑1 (MQ=255)

                                                                                                                     aaCAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAAttt                 >  2:1006165/1‑140 (MQ=255)

                                                                                                                      aCAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTg                >  1:1829904/1‑140 (MQ=255)

                                                                                                                      aCAATCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTg                >  2:1382697/1‑140 (MQ=255)

                                                                                                                      aCAATAAGAAAAGACTAATAGTCTCTCAAGCATTGGCTTTATAAATGAAAAATAAAAATCAAAAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTg                <  2:1198458/140‑1 (MQ=255)

                                                                                                                        aaTCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGaa              <  2:287221/140‑1 (MQ=255)

                                                                                                                        aaTCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGaa              <  1:970709/140‑1 (MQ=255)

                                                                                                                         aTCAGATGAGACTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAAc             <  2:1455580/140‑1 (MQ=255)

                                                                                                                                gagaCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCa      <  2:1136313/140‑1 (MQ=255)

                                                                                                                                gagaCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCa      <  1:607612/140‑1 (MQ=255)

                                                                                                                                gagaCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCa      <  2:749975/140‑1 (MQ=255)

                                                                                                                                 agaCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCAc     <  1:215327/140‑1 (MQ=255)

                                                                                                                                   aCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGaa              <  2:1260344/129‑1 (MQ=255)

                                                                                                                                   aCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGaa              >  1:1260344/1‑129 (MQ=255)

                                                                                                                                   aCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACgg   >  1:796428/1‑140 (MQ=255)

                                                                                                                                   aCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACgg   >  2:1465572/1‑140 (MQ=255)

                                                                                                                                   aCTAATAATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATG‑TTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGt  >  1:570863/1‑140 (MQ=255)

GAAATCGATCAGACGCGATGCATTGCTCTGAAAGCATAGACGGGAAATATGAGTTTGCTGTGACCATGAAATTTTTCGACTGAACGAAGCGTATGAAATTTGTGTTAGTTCAATAAAAACAATCAGATGAGACTAATCATCTCTTCAGCATTAGCGTTATGAATGAGTAATATAAATCGATAATACCGCCGCTGGGATATCGCGTATTTTCACCCATTGACAATGTTTTTGGCGGTGGCATGATGCGCATGAAATTTGAACTTCCTCACGGT  >  NC_000913/945591‑945862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`