Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,101,514 | 0 | G | T | 23.6% | 147.8 / 15.6 | 55 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
Reads supporting (aligned to +/- strand): ref base G (6/36); new base T (13/0); total (19/36) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.87e-08 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
TGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACG > NC_000913/4101377‑4101653 | tGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTtgtg < 2:636718/140‑1 (MQ=255) cGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCaa > 2:769666/1‑140 (MQ=255) cGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCaa > 1:1497605/1‑140 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATCAAtt > 1:1413003/1‑140 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTTAAtt > 2:1218075/1‑140 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAAtt > 2:202913/1‑140 (MQ=255) aggAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTc < 1:762838/138‑1 (MQ=255) aaCTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAATTTTaaa > 2:458432/1‑140 (MQ=255) cTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAAt < 1:1418371/140‑1 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATCAATTTCAAAATaaa > 2:533381/1‑140 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTCaaaaaaaa > 1:1323973/1‑140 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGCGGGTTTTTTTTTTTTCATTTTAAAAAAAAAAAcc > 2:762838/1‑139 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATTAATTTTAAAATaaaaaaaa > 2:842252/1‑140 (MQ=255) gcagcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATg > 1:1495114/1‑140 (MQ=255) agcGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGAt < 1:458432/140‑1 (MQ=255) gTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGataaa < 2:1469158/140‑1 (MQ=255) ggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCAataaaaataaaa < 2:95303/140‑1 (MQ=255) gcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAAc < 2:215822/140‑1 (MQ=255) gAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAg < 2:835046/140‑1 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 2:290412/140‑1 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 1:792620/140‑1 (MQ=255) tttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAt < 2:1495114/140‑1 (MQ=255) ttGCCTCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg < 1:170419/140‑1 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg < 1:1395812/140‑1 (MQ=255) gccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGtt < 1:404845/140‑1 (MQ=255) tgctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTg < 1:533381/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 2:1388073/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 2:1210768/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 1:1218075/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGAt < 1:916244/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑CGGTTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTGGTTTTGAt > 2:570136/1‑140 (MQ=255) gcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCa < 2:170646/140‑1 (MQ=255) aGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTa < 2:900606/140‑1 (MQ=255) gCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAATTTTTAAAAAAAAAAAAAAAACCCGCAAAAAAAAAAAAGCGTTTCCATTGATGTGGGTTTTTTTACTtttttt > 2:1381277/1‑140 (MQ=255) cGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTTATCAAATTTAAAATAAAAAAAAAGATCCGATAAAAATAAAAAAAGGGTTCAATTGATGTGGGTTTTATTCCTTTTAttt > 2:1294388/1‑139 (MQ=255) gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGa < 1:1060378/140‑1 (MQ=255) gTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGa < 1:985025/140‑1 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAAAAAAAACAAAGATCCGATAAAAAAAAAAAAGCGTTTCAATTGATGTGGGTTTTATCACTTttatttat > 1:148408/1‑140 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAATGATCCGATAAAAAAAAAAAAACGTTTCAATTGATGTGGTTTTGATCACTTTTTTTTAt > 2:1371603/1‑140 (MQ=255) ataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGAtt < 1:77640/140‑1 (MQ=255) aGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTaa < 1:538659/140‑1 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatga < 2:220826/140‑1 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑GGGGTTTTTTTTGATCAAATTTAAAATAAAAAAAAAGATCCGATAAAAATAAAACAGCGGTTCAATTGATGTGGGTTTTTTCACTTTTATTTTTTAaatta > 2:1411946/1‑138 (MQ=255) gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAGATCCGCTAAAAATAAAACAACGTTTTAATTTATGTGGTTTTGATCACTTTTTTTTATTAaatgaa > 2:104302/1‑140 (MQ=255) gCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGATTCGATAAAAATAAAACAGCGTTTTAATTTATGTGGGTTTGATCACTTTTTTTTATTAaatgaa > 2:839781/1‑140 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGGTCAATTTTAAAATAAAAACAAAGAACCGATAAAAATAAAAAAACGGTTTAATTGATGTGGTTTTTATCACTTTTTTTTATTAaatgaatg > 2:985025/1‑140 (MQ=255) tatCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGt < 2:692349/140‑1 (MQ=255) atCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTc < 2:43197/140‑1 (MQ=255) aGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatg < 2:578175/131‑1 (MQ=255) aGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTTATCACTTTTTTTGATTAAATGAATGTCTAt > 1:491074/1‑140 (MQ=255) aGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAaatg > 1:578175/1‑131 (MQ=255) aGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTGGGTTTGATCACTTTTATTGATTAAATGAATGTCTAt > 1:137428/1‑140 (MQ=255) aaaaaaTGAACCATCGCCAACGGCGG‑TGGGTTTTTTTTGATCAAATTTAAAAAAAAAAAAAAGATCCGATAAAAATAAAAAAACGTTTCAATTGATGTGGGTTTTATCACTTTTATTTATTAAATGAATGTCTATCTTct > 2:509039/1‑139 (MQ=255) aaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 2:1408239/140‑1 (MQ=255) aaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 2:148408/140‑1 (MQ=255) aaaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 1:769666/140‑1 (MQ=255) aaaTGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGttt < 1:1211510/140‑1 (MQ=255) tGAACCATCGCCAACGGCGG‑TGG‑TTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCAt < 1:137104/140‑1 (MQ=255) gAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCAt < 1:842252/140‑1 (MQ=255) aaCCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATc < 1:104302/140‑1 (MQ=255) cggcgg‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCt < 1:691592/140‑1 (MQ=255) tttttGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGaa > 2:551983/1‑140 (MQ=255) gtgATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACg > 1:941568/1‑140 (MQ=255) | TGGAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGG‑TGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTGGTTTTGATCACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAGGAATTACG > NC_000913/4101377‑4101653 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |