Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NC_000913 | 1,161,737 | C→A | intergenic (‑186/‑148) | fhuE ← / → hinT | ferric coprogen/ferric rhodotorulic acid outer membrane transporter/purine nucleoside phosphoramidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 1,161,737 | 0 | C | A | 96.8% | 211.4 / 0.2 | 62 | intergenic (‑186/‑148) | fhuE/hinT | ferric coprogen/ferric rhodotorulic acid outer membrane transporter/purine nucleoside phosphoramidase |
Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (31/29); total (32/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
TGAGCGATTATATTTAGTGTGCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGCGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGGCGCAACGCATGGCTATTTGAAAA > NC_000913/1161603‑1161873 | tgaGCGATTATATTTAGTGTGCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGatat > 1:784973/1‑140 (MQ=255) tgtgCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGa > 2:505876/1‑140 (MQ=255) tgtgCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGa > 2:1473847/1‑140 (MQ=255) tgtgCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGa > 2:1083125/1‑140 (MQ=255) tgtgCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGa > 1:751624/1‑140 (MQ=255) tgtgCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGa > 1:480826/1‑140 (MQ=255) tgtgCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGa > 1:394220/1‑140 (MQ=255) gCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGAttt > 2:256706/1‑140 (MQ=255) gCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGAttt > 2:790293/1‑140 (MQ=255) gCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGAttt > 1:472544/1‑140 (MQ=255) cGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGAtttt > 1:1394667/1‑140 (MQ=255) gAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGAttttt < 2:529729/140‑1 (MQ=255) tgtAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATc < 1:573459/140‑1 (MQ=255) aaaTGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTg > 1:853211/1‑140 (MQ=255) gCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGtt < 1:100317/140‑1 (MQ=255) gCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGtt < 2:1394667/140‑1 (MQ=255) tGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGt < 1:834162/140‑1 (MQ=255) ataCGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAagag < 2:597322/140‑1 (MQ=255) ataCGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAagag < 1:504022/140‑1 (MQ=255) ataCGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAagag < 2:805128/140‑1 (MQ=255) aTTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGtt > 1:47153/1‑140 (MQ=255) cATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCGGGTTTaa > 2:1248479/1‑140 (MQ=255) cATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTaa > 2:1277867/1‑140 (MQ=255) cATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTaa > 1:861920/1‑140 (MQ=255) tatTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCGGGTTTAACt < 1:1248479/140‑1 (MQ=255) tatTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACt < 2:780166/140‑1 (MQ=255) tatTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACt < 1:1277867/140‑1 (MQ=255) tatTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGAAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACt < 1:1344779/140‑1 (MQ=255) ttGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGa < 1:997176/140‑1 (MQ=255) ttGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGa < 2:853211/140‑1 (MQ=255) tGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAc < 1:1129912/140‑1 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc < 2:1261682/140‑1 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc < 2:960204/140‑1 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc < 1:1152107/140‑1 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc < 2:751624/140‑1 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc > 1:960204/1‑140 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc < 1:898300/140‑1 (MQ=255) gTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGAcc > 1:720127/1‑140 (MQ=255) tGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATAc > 1:564022/1‑140 (MQ=255) tGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATAc > 2:1468448/1‑140 (MQ=255) tAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATActc < 2:1266949/140‑1 (MQ=255) tAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATActc < 1:316983/140‑1 (MQ=255) tAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATActc > 2:316983/1‑140 (MQ=255) aaCCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCAt > 2:547050/1‑134 (MQ=255) aaCCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCAt < 1:547050/134‑1 (MQ=255) aCAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGTAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCg > 2:1390389/1‑140 (MQ=255) cAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGc > 1:1092621/1‑140 (MQ=255) aaTGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGCGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAgtgt > 1:1405998/1‑140 (MQ=255) aaTGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAgtgt > 2:96183/1‑140 (MQ=255) tCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGgcg < 1:1473847/140‑1 (MQ=255) tCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGgcg < 1:1083125/140‑1 (MQ=255) ttttCAGCGCATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGcgcg > 1:1269679/1‑140 (MQ=255) gcgcATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAg > 1:139968/1‑140 (MQ=255) gcATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCa < 2:480826/140‑1 (MQ=255) gcATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCa > 2:1369623/1‑140 (MQ=255) gcATTCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCa < 1:1369623/140‑1 (MQ=255) tCGCAGGCAGAAATGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGgc > 2:1046226/1‑140 (MQ=255) cGCAGGCAGAAATGGGAATAATGGCGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGgcg < 2:1405998/140‑1 (MQ=255) aaTGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGGCGCAACGCATgg < 2:720127/140‑1 (MQ=255) aTGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGgcg < 2:28381/129‑1 (MQ=255) aTGGGAATAATGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGgcg > 1:28381/1‑129 (MQ=255) tGGAGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGGCGCAACGCATGGCTATTTGaaaa > 1:1249742/1‑140 (MQ=255) | TGAGCGATTATATTTAGTGTGCGAATAATTTTGTTTGTAAATGCAAATGAGAAATATACGCATTCATATTTGTCATGTAAACCAAACAGAGAATGTCTTTTCAGCGCATTCGCAGGCAGAAATGGGAATAATGGCGATATATACGGCAGCAAAACGATTTTTTGCTTAAGAAATCGTGAGTTAAGGTTGAAAGAGCAGGTTTAACTCGACCATACTCTATACTCGCAGTGTGGCGCGGCGTAGCATGGCGCAACGCATGGCTATTTGAAAA > NC_000913/1161603‑1161873 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |