Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,206,798	C→A	pseudogene (668/792 nt)	jayE →	e14 prophage; putative protein JayE

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,206,798	0	C	A	100.0%	316.2 / NA	89	pseudogene (668/792 nt)	jayE	e14 prophage; putative protein JayE
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (43/46);  total (43/46)

GTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAACGATG  >  NC_000913/1206661‑1206931                                                                                                                                          |                                                                                                                                      gtTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATagc                                                                                                                                     >  1:1466667/1‑140 (MQ=255)  ttCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATagcg                                                                                                                                    <  1:507809/140‑1 (MQ=255)      ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATc                                                                                                                                >  2:679096/1‑140 (MQ=255)      ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATc                                                                                                                                >  2:642085/1‑140 (MQ=255)      ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATc                                                                                                                                >  1:1196326/1‑140 (MQ=255)      ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATc                                                                                                                                >  1:151481/1‑140 (MQ=255)      ggCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATc                                                                                                                                >  2:1018191/1‑140 (MQ=255)       gCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCa                                                                                                                               >  1:384543/1‑140 (MQ=255)         cGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGt                                                                                                                             <  2:1142097/140‑1 (MQ=255)            tGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTgta                                                                                                                          >  2:269618/1‑138 (MQ=255)            tGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAg                                                                                                                          >  1:613538/1‑140 (MQ=255)                 caTACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGAt                                                                                                                     >  2:1300285/1‑140 (MQ=255)                   tACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGACGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGAttt                                                                                                                   >  1:978843/1‑140 (MQ=255)                       gTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCgg                                                                                                               <  2:613538/140‑1 (MQ=255)                        tGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGt                                                                                                              >  1:742382/1‑140 (MQ=255)                        tGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGt                                                                                                              >  2:20480/1‑140 (MQ=255)                        tGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGACGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGt                                                                                                              <  2:978843/140‑1 (MQ=255)                            ttttCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGa                                                                                                          <  2:742382/140‑1 (MQ=255)                            ttttCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGa                                                                                                          <  1:1300285/140‑1 (MQ=255)                            ttttCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGa                                                                                                          <  1:1419353/140‑1 (MQ=255)                              ttCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAAc                                                                                                        >  1:246981/1‑140 (MQ=255)                               tCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACg                                                                                                       <  1:570952/140‑1 (MQ=255)                                cATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACgg                                                                                                      <  1:127737/140‑1 (MQ=255)                                cATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGCGCGAACgg                                                                                                      >  1:1098251/1‑140 (MQ=255)                                    tCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGaa                                                                                                  >  1:325544/1‑140 (MQ=255)                                      cgcgTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATa                                                                                                <  1:27309/140‑1 (MQ=255)                                      cgcgTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATa                                                                                                <  1:642085/140‑1 (MQ=255)                                       gcgTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATAc                                                                                               >  2:459846/1‑140 (MQ=255)                                            aCGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCa                                                                                          <  1:348302/140‑1 (MQ=255)                                               ccGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCa                                                                                       <  2:1350331/140‑1 (MQ=255)                                               ccGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCa                                                                                       <  2:384543/140‑1 (MQ=255)                                               ccGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCa                                                                                       <  1:1214496/140‑1 (MQ=255)                                                cGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAg                                                                                      >  1:987602/1‑140 (MQ=255)                                                     acacCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGttgct                                                                                 <  1:459846/140‑1 (MQ=255)                                                       acCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCTATTTCCGGTGCGAACGGGGAATACAGCCATCAGttgcttg                                                                               <  2:1196326/140‑1 (MQ=255)                                                       acCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGttgcttg                                                                               <  2:431158/140‑1 (MQ=255)                                                       acCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGttgcttg                                                                               >  1:269616/1‑140 (MQ=255)                                                         cAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCa                                                                             <  2:750643/140‑1 (MQ=255)                                                          aGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCAc                                                                            <  2:1399376/140‑1 (MQ=255)                                                           gAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCAcc                                                                           <  1:20480/140‑1 (MQ=255)                                                            aaaTACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCg                                                                          <  1:1018191/140‑1 (MQ=255)                                                            aaaTACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCg                                                                          >  2:706018/1‑140 (MQ=255)                                                             aaTACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCgg                                                                         <  2:1466667/140‑1 (MQ=255)                                                               tACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTg                                                                       >  1:60850/1‑140 (MQ=255)                                                               tACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTg                                                                       <  2:1223334/140‑1 (MQ=255)                                                               tACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTg                                                                       <  1:679096/140‑1 (MQ=255)                                                                 cGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCa                                                                                       <  1:1245543/122‑1 (MQ=255)                                                                 cGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCa                                                                                       >  2:1245543/1‑122 (MQ=255)                                                                 cGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTg                                                                       >  2:719795/1‑138 (MQ=255)                                                                 cGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTg                                                                       <  1:719795/138‑1 (MQ=255)                                                                 cGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGa                                                                     >  2:897168/1‑140 (MQ=255)                                                                 cGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGa                                                                     >  1:541210/1‑140 (MQ=255)                                                                  gggCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGAc                                                                    <  2:511343/140‑1 (MQ=255)                                                                   ggCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACa                                                                   >  1:207232/1‑140 (MQ=255)                                                                   ggCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACa                                                                   >  1:293781/1‑140 (MQ=255)                                                                    gCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACaa                                                                  <  2:25330/140‑1 (MQ=255)                                                                      tGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCa                                                                             <  1:1463376/127‑1 (MQ=255)                                                                      tGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCa                                                                             >  2:1463376/1‑127 (MQ=255)                                                                      tGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAata                                                                >  2:279189/1‑140 (MQ=255)                                                                              ccGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCAtt                                                        >  1:6088/1‑140 (MQ=255)                                                                                 cgGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCg                                                     >  1:393324/1‑140 (MQ=255)                                                                                         cgttcgttCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGa                                             <  2:347490/140‑1 (MQ=255)                                                                                              gttcCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTgg                                        <  2:207232/140‑1 (MQ=255)                                                                                              gttcCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTgg                                        <  1:706018/140‑1 (MQ=255)                                                                                                        cGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCg                                      >  1:1125416/1‑132 (MQ=255)                                                                                                        cGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCg                                      <  2:1125416/132‑1 (MQ=255)                                                                                                        cGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTggg                              >  2:270260/1‑140 (MQ=255)                                                                                                        cGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTggg                              >  2:68171/1‑140 (MQ=255)                                                                                                        cGTGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTggg                              >  2:33319/1‑140 (MQ=255)                                                                                                          tGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGa                            <  2:475552/140‑1 (MQ=255)                                                                                                          tGATGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGa                            >  1:475552/1‑140 (MQ=255)                                                                                                             tGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGa                         <  2:246981/140‑1 (MQ=255)                                                                                                             tGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGa                         <  2:6088/140‑1 (MQ=255)                                                                                                             tGGTTATCCGCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGa                         >  2:115898/1‑140 (MQ=255)                                                                                                                      gCAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGa                <  2:151481/140‑1 (MQ=255)                                                                                                                       cAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGAc               >  2:277464/1‑140 (MQ=255)                                                                                                                       cAGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGAc               >  1:642716/1‑140 (MQ=255)                                                                                                                        aGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATgg                 <  1:57699/137‑1 (MQ=255)                                                                                                                        aGGGAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATgg                 >  2:57699/1‑137 (MQ=255)                                                                                                                         gggAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGt             >  1:1371393/1‑140 (MQ=255)                                                                                                                          ggAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGAc               >  1:385370/1‑137 (MQ=255)                                                                                                                          ggAGAACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGAc               <  2:385370/137‑1 (MQ=255)                                                                                                                           gagaACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGa           <  1:279189/140‑1 (MQ=255)                                                                                                                             gaACTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGCGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACa         <  2:1098251/140‑1 (MQ=255)                                                                                                                               aCTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACaaa       <  1:491387/140‑1 (MQ=255)                                                                                                                                cTCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAAc      <  1:115898/140‑1 (MQ=255)                                                                                                                                 tCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAACg     <  2:642716/140‑1 (MQ=255)                                                                                                                                 tCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAACg     <  1:68171/140‑1 (MQ=255)                                                                                                                                 tCAAGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAACg     <  2:1371393/140‑1 (MQ=255)                                                                                                                                    aGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCGTGGACGTGACAAACgatg  >  2:45613/1‑140 (MQ=255)                                                                                                                                    aGGTATAGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAACgatg  >  2:1389898/1‑140 (MQ=255)                                                                                                                                          |                                                                                                                                      GTTCAGGCCGGTGGCACATACGGTGGATTTTCATATCCGCGTGACGCCGGACACACCAGAAATACGGGCTGCCATTACCGCGGAGTTGCGTTCGTTCCTGCTGCGTGATGGTTATCCGCAGGGAGAACTCAAGGTATCGCGTATCAGTGAGGCGATTTCCGGTGCGAACGGGGAATACAGCCATCAGTTGCTTGCACCGGTGGACAATATCTCCATTGCGAAAAACGAACTGGCGGTACTGGGGACGATTTCATGGACGTGACAAACGATG  >  NC_000913/1206661‑1206931

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑