Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,101,514 | 0 | G | T | 23.2% | 143.5 / 21.4 | 56 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
Reads supporting (aligned to +/- strand): ref base G (9/34); new base T (13/0); total (22/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 2.63e-07 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.70e-01 | |||||||||||
Rejected as consensus: Frequency below/above cutoff threshold. |
GAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAG > NC_000913/4101379‑4101645 | gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGAt < 2:812687/140‑1 (MQ=255) gAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGAt > 2:412796/1‑140 (MQ=255) tggtgAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAAtt > 2:711393/1‑140 (MQ=255) gAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCaa < 2:828663/140‑1 (MQ=255) cTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCTGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTaaaaa > 2:1208423/1‑139 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGTTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGGTTAATTTCACaaaaaa > 1:855108/1‑140 (MQ=255) ggACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAATaaa > 1:1719264/1‑140 (MQ=255) gACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGTTTTTTTTTGATCAATTTCTAAATaaaa > 2:102782/1‑140 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTTTGGTTAATTTCAAAATaaaaaaaa > 2:671801/1‑140 (MQ=255) aaGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGGGGGTTTTTTTTGATCAATTTTAAAATAAAAACaa > 2:1690375/1‑140 (MQ=255) cGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTTATCAAATTCAAAAAAAAAACAATAATcc > 1:1157559/1‑140 (MQ=255) cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat < 1:919122/140‑1 (MQ=255) cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat < 1:929409/140‑1 (MQ=255) cACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGat < 2:1719264/140‑1 (MQ=255) cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAAGAATCGataa > 2:400539/1‑140 (MQ=255) cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAGATCCGataa > 2:1589743/1‑140 (MQ=255) cGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGataa > 1:505720/1‑140 (MQ=255) ggcgAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGAGGGTTTTTTTTGATCAATTTTAAAAAAAAAAAAAAGATCCGataaaaaaaaaa > 2:1687933/1‑140 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 1:1690375/140‑1 (MQ=255) aaaaTAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGt < 1:1589743/140‑1 (MQ=255) ataatCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTc < 1:1414500/140‑1 (MQ=255) aatCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCaa < 2:556131/140‑1 (MQ=255) aTTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGa < 2:1289464/140‑1 (MQ=255) ttGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGAtg < 1:616658/140‑1 (MQ=255) tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCaa > 1:983415/1‑133 (MQ=255) tGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCaa < 2:983415/133‑1 (MQ=255) gccgccTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGGTCAATTTTAAAATAAAAAAAATGATCCGATAAAAATAAAAAAGCGGTTCAATTTAtgtg > 2:296018/1‑140 (MQ=255) tgctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTg < 2:1646078/140‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt < 2:1661016/125‑1 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAAt > 1:1661016/1‑125 (MQ=255) ctgcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTTAAATAAAAAAAAAGATCCGATAAAAAAAAAAAAACGTTTTAATTTATGTG‑Gttttttt > 2:1130578/1‑137 (MQ=255) gcAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑Ca < 1:1565311/140‑1 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGAt < 2:180450/140‑1 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGAt > 1:180450/1‑140 (MQ=255) tataGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAAAAAATATCCGATAAAAAAAAAAAAGCGGTTTAATTGATGTG‑GTTTTTAT‑CACTTttatttat > 2:1514113/1‑140 (MQ=255) taGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTa < 2:505720/140‑1 (MQ=255) gctgCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAaat < 1:1208423/137‑1 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATCAATTTTAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGGTTCAATTGATGTG‑GGTTTGAT‑CACTTTTTTTGATTAaatga > 1:272903/1‑140 (MQ=255) cGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTAGTGTTTTTTTGATGAATTTTAAAATAAAAACAAATATTCGCTAAAAATAAAACAGGGTTTCAAATTGTGGG‑GGTTTGGT‑CGCTTTTATTATTTAaaaga > 2:1510555/1‑140 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTTATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGATTCTATTTATGTG‑GGTTTTTT‑CACTTTTATTGATTAaaagaaag > 2:212886/1‑138 (MQ=255) atatCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAACAGCGGTTCAATTGATGTG‑GGTTTGAT‑CACTTTTTTTTATTAaatgaatg > 1:913194/1‑140 (MQ=255) tatCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTTTGATAAATTTTAAAATAAAAACAAAGAATCGATAAAAATAAAAAAACGCTTTAATTG‑TGAGAGTTTTTATACCTTTTTATTGTTTAaataatat > 2:851576/1‑135 (MQ=255) tCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCt < 1:105487/140‑1 (MQ=255) tCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCt < 1:1223034/140‑1 (MQ=255) aGCTTAAAAAATGAACCATCGCCAACGGCGGTGGGTTTTTTGTGATCAATTTTAAAAAAAAAAAAAAGATCCGATAAAAAAAAAAAAGCGGTTCAATTGATGTG‑GTTTTTAT‑CACTTTTTTTGATTAAATGAATGTCTAt > 2:1674680/1‑140 (MQ=255) aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 2:272903/140‑1 (MQ=255) aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 2:1293257/140‑1 (MQ=255) aaaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGtt < 1:1547948/140‑1 (MQ=255) aaaTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGttt < 2:855108/140‑1 (MQ=255) aTGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTcc < 1:671801/140‑1 (MQ=255) gAACCATCGCCAACGGCGGTGGTTTTTTTTTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAACAACGTTTCAATTGATGTG‑GGTTTTAT‑CACTTTTTTTTATTAAATGAAAGTCTTTCTTCGTTTTCAt > 2:1547948/1‑140 (MQ=255) gAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCAt < 2:1157559/140‑1 (MQ=255) aTCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAaca < 1:1514113/140‑1 (MQ=255) cGCCAACGGCGGTGGGTTTTTTGTGATCAATTTTAAAATAAAAACAATGATCCGATAAAAATAAAAAAGCGTTTCAATTGATGTG‑GGTTTGAT‑CACTTTTATTTATTAAATGAATGTCTATCTTTGTTTCCATCAACACt > 1:1745372/1‑140 (MQ=255) gCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTg < 1:412796/140‑1 (MQ=255) aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg < 1:678413/140‑1 (MQ=255) aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg < 2:58834/140‑1 (MQ=255) aaCGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATg < 1:400539/140‑1 (MQ=255) ggcggTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTc < 2:942259/140‑1 (MQ=255) ggcggTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTc < 1:296018/140‑1 (MQ=255) cggTGGTTTTTTTGTGATCAATTTCAAAATAAAAAAAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCa > 2:313834/1‑140 (MQ=255) gtTTTTTTGTGATCAAATTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAg < 1:1086980/140‑1 (MQ=255) | GAACGTGGTGAACTGGGACGAAGCAGCGGCACGTTTTGCGGCGAAAAAATAATCATTTGCCGCCTGCTGCAATGAGGCGTATAGGCCGCATATCAGCTTAAAAAATGAACCATCGCCAACGGCGGTGGTTTTTTTGTGATCAATTTCAAAATAAAAACAATGATCCGATAAAAATAAAACAGCGTTTCAATTGATGTG‑GTTTTGAT‑CACTTTTATTGATTAAATGAATGTCTATCTTCGTTTCCATCAACACTGATGCTCCATTGAG > NC_000913/4101379‑4101645 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |