BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,844,007	C→A	A15D (GCT→GAT)	adeD →	adenine deaminase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,844,007	0	C	A	98.3%	416.4 / ‑0.5	119	A15D (GCT→GAT)	adeD	adenine deaminase
Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (60/57); total (61/58)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01

Only 100 of 120 total aligned reads displayed.

TTCAATTGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGCTGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGC  >  NC_000913/3843870‑3844142

ttCAATTGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATg                                                                                                                                       >  1:1070895/1‑140 (MQ=255)

 tCAATTGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGa                                                                                                                                      >  1:113872/1‑140 (MQ=255)

  cAATTGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGaa                                                                                                                                     >  1:855951/1‑140 (MQ=255)

  cAATTGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGaa                                                                                                                                     <  1:1489863/140‑1 (MQ=255)

      tGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATAcc                                                                                                                                 <  1:232741/140‑1 (MQ=255)

      tGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATAcc                                                                                                                                 >  1:126550/1‑140 (MQ=255)

          caTTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGa                                                                                                                             >  2:428371/1‑140 (MQ=255)

          caTTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGa                                                                                                                             >  2:769304/1‑140 (MQ=255)

                tGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGtt                                                                                                                       >  2:1670202/1‑140 (MQ=255)

                  gATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAg                                                                                                                     >  1:1240317/1‑140 (MQ=255)

                     atTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCg                                                                                                                  >  1:1530067/1‑140 (MQ=255)

                       tCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGcc                                                                                                                   >  1:213933/1‑137 (MQ=255)

                       tCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGtt                                                                                                                >  2:724012/1‑140 (MQ=255)

                       tCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGtt                                                                                                                >  1:1760685/1‑140 (MQ=255)

                                atCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGc                                                                                                       >  1:678914/1‑140 (MQ=255)

                                 tctcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGCTGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCg                                                                                                      >  2:732543/1‑140 (MQ=255)

                                 tctcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCg                                                                                                      <  1:1454855/140‑1 (MQ=255)

                                 tctcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCg                                                                                                      >  1:732306/1‑140 (MQ=255)

                                 tctcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCg                                                                                                      >  2:1074667/1‑140 (MQ=255)

                                  ctcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGa                                                                                                     <  1:1074667/140‑1 (MQ=255)

                                  ctcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGa                                                                                                     <  2:355538/140‑1 (MQ=255)

                                   tcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGAc                                                                                                    >  1:1764093/1‑140 (MQ=255)

                                   tcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGAc                                                                                                    >  1:964418/1‑140 (MQ=255)

                                   tcGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGAc                                                                                                    >  2:1747993/1‑140 (MQ=255)

                                    cgcgACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACg                                                                                                   <  2:857435/140‑1 (MQ=255)

                                       gACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGCTGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTg                                                                                                <  1:732543/140‑1 (MQ=255)

                                       gACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTg                                                                                                <  1:413055/140‑1 (MQ=255)

                                         cGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGtt                                                                                              <  1:638731/140‑1 (MQ=255)

                                            ttCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGcc                                                                                           <  1:1195575/140‑1 (MQ=255)

                                              cTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGa                                                                                         <  2:113872/140‑1 (MQ=255)

                                              cTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGa                                                                                         <  2:1764093/140‑1 (MQ=255)

                                              cTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGa                                                                                         <  1:530615/140‑1 (MQ=255)

                                                ttATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGatt                                                                                       <  2:855951/140‑1 (MQ=255)

                                                ttATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGatt                                                                                       <  1:59648/140‑1 (MQ=255)

                                                ttATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGatt                                                                                       <  2:711860/140‑1 (MQ=255)

                                                 tATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGatta                                                                                      <  2:732306/140‑1 (MQ=255)

                                                  aTGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGattat                                                                                     <  2:438934/140‑1 (MQ=255)

                                                   tGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGtt                                                                                              >  1:898929/1‑130 (MQ=255)

                                                   tGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGtt                                                                                              <  2:898929/130‑1 (MQ=255)

                                                   tGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGcc                                                                                           >  1:404659/1‑133 (MQ=255)

                                                   tGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGcc                                                                                           <  2:404659/133‑1 (MQ=255)

                                                    gATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGattatat                                                                                   <  2:1470711/140‑1 (MQ=255)

                                                    gATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGattatat                                                                                   <  1:805175/140‑1 (MQ=255)

                                                    gATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGattatat                                                                                   <  2:641865/140‑1 (MQ=255)

                                                     ataaataaTAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGattatatt                                                                                  >  2:1054409/1‑140 (MQ=255)

                                                        aataataatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGcc                                                                                           <  1:1643181/128‑1 (MQ=255)

                                                        aataataatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGcc                                                                                           >  2:1643181/1‑128 (MQ=255)

                                                        aataataatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATattatt                                                                               >  1:1625245/1‑140 (MQ=255)

                                                        aataataatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATattatt                                                                               >  1:1582557/1‑140 (MQ=255)

                                                           aataatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGAt                                                                            <  2:61419/140‑1 (MQ=255)

                                                            ataatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATa                                                                           <  2:126550/140‑1 (MQ=255)

                                                              aatCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAAt                                                                         <  1:1041195/140‑1 (MQ=255)

                                                               atCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATg                                                                        <  2:546039/140‑1 (MQ=255)

                                                               atCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATg                                                                        >  1:1187398/1‑140 (MQ=255)

                                                                tCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGt                                                                       >  1:503189/1‑140 (MQ=255)

                                                                  aaaTTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGtct                                                                     >  2:1146790/1‑140 (MQ=255)

                                                                   aaTTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATg                                                                        >  2:498649/1‑136 (MQ=255)

                                                                   aaTTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATg                                                                        <  1:498649/136‑1 (MQ=255)

                                                                    aTTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTctct                                                                   >  1:728014/1‑140 (MQ=255)

                                                                    aTTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTctct                                                                   >  2:654531/1‑140 (MQ=255)

                                                                        aTAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGtctc                                                                    <  2:699903/135‑1 (MQ=255)

                                                                          aaaaTCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATtctc                                                             >  1:1601792/1‑140 (MQ=255)

                                                                             aTCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGAc                                                          <  2:964418/140‑1 (MQ=255)

                                                                             aTCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGAc                                                          <  2:1530067/140‑1 (MQ=255)

                                                                             aTCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGAc                                                          <  1:654531/140‑1 (MQ=255)

                                                                              tCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGAcc                                                         >  1:1161301/1‑140 (MQ=255)

                                                                                  aaTGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATtc                                                               >  2:1267121/1‑130 (MQ=255)

                                                                                  aaTGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGAt                                                     >  2:277197/1‑140 (MQ=255)

                                                                                     gagaAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCaa                                                  <  2:1445865/140‑1 (MQ=255)

                                                                                          aaaTATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCg                                             >  1:1317910/1‑140 (MQ=255)

                                                                                                    aatTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTc                                   <  2:1240317/140‑1 (MQ=255)

                                                                                                     atTCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTcc                                  >  2:460551/1‑140 (MQ=255)

                                                                                                      ttCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCg                                 >  1:70781/1‑140 (MQ=255)

                                                                                                      ttCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCg                                 >  2:465902/1‑140 (MQ=255)

                                                                                                       tCTATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCgg                                >  1:277774/1‑140 (MQ=255)

                                                                                                         tATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGcc                              <  1:1054409/140‑1 (MQ=255)

                                                                                                         tATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGcc                              <  1:1417400/140‑1 (MQ=255)

                                                                                                         tATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGcc                              <  1:1747993/140‑1 (MQ=255)

                                                                                                         tATTAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGcc                              <  2:1317910/140‑1 (MQ=255)

                                                                                                           ttAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCa                            >  1:953092/1‑140 (MQ=255)

                                                                                                            tAACCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCaa                           <  2:678914/140‑1 (MQ=255)

                                                                                                              aCCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAAtt                         <  1:769304/140‑1 (MQ=255)

                                                                                                              aCCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAAtt                         <  2:1070895/140‑1 (MQ=255)

                                                                                                              aCCATAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAAtt                         >  1:285523/1‑140 (MQ=255)

                                                                                                                cATAAATTTCATCACATTTGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTc                                   >  2:136120/1‑128 (MQ=255)

                                                                                                                cATAAATTTCATCACATTTGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTc                                   <  1:136120/128‑1 (MQ=255)

                                                                                                                 aTAAATTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCACGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATtgtg                      >  2:720028/1‑140 (MQ=255)

                                                                                                                   aaaTTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGAt                    >  2:784440/1‑140 (MQ=255)

                                                                                                                     aTTTCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTa                  <  2:1760685/140‑1 (MQ=255)

                                                                                                                       ttCATCACATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTaaa                <  2:1763040/140‑1 (MQ=255)

                                                                                                                          atcaCATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGa             <  1:465902/140‑1 (MQ=255)

                                                                                                                          atcaCATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGa             >  1:180816/1‑140 (MQ=255)

                                                                                                                          atcaCATTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGa             >  1:675645/1‑140 (MQ=255)

                                                                                                                            cacaTTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACg           <  2:70781/140‑1 (MQ=255)

                                                                                                                            cacaTTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACg           <  2:1523575/140‑1 (MQ=255)

                                                                                                                              caTTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGtt         >  1:541351/1‑140 (MQ=255)

                                                                                                                               aTTAGCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTa        <  2:22004/140‑1 (MQ=255)

                                                                                                                                   gCCGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACAtt    >  2:894130/1‑140 (MQ=255)

                                                                                                                                    ccGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTg   >  2:397031/1‑140 (MQ=255)

                                                                                                                                     cGGGATGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGc  <  2:541351/140‑1 (MQ=255)

TTCAATTGCACATTAATGGATATTCTTTAATAATCTCGCGACGTTTCTTTATGATAAATAATAATCAAATTGATAAAATCAAAATGAGAAAAATATGAATAATTCTATTAACCATAAATTTCATCACATTAGCCGGGCTGAATACCAGGAATTGTTAGCCGTTTCCCGTGGCGACGCTGTTGCCGATTATATTATTGATAATGTCTCTATTCTCGACCTGATCAATGGCGGAGAAATTTCCGGCCCAATTGTGATTAAAGGACGTTACATTGC  >  NC_000913/3843870‑3844142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`