| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 41.6% | 86.6 / 62.0 | 89 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| Reads supporting (aligned to +/- strand): ref base C (10/42); new base T (37/0); total (47/42) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.65e-16 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT > NC_000913/4604209‑4604481 | gCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATtttttctttt > 1:485504/1‑140 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATtttttcttttt < 1:1435637/140‑1 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATtttttcttttt < 1:1402795/140‑1 (MQ=255) cGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATtttttcttttt < 1:1808692/140‑1 (MQ=255) tCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTttttctttttct < 1:1139209/140‑1 (MQ=255) aTGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGc < 2:729510/140‑1 (MQ=255) gAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCa < 1:718933/140‑1 (MQ=255) agtagtATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCAt < 1:848764/140‑1 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGAGAAGGGAg > 2:447035/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGAGAAGGGAg > 2:1121942/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGTGAg > 2:1525568/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGCCATga > 1:531926/1‑132 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGCCATGAAAAGTGAg > 2:239669/1‑140 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATga < 2:531926/132‑1 (MQ=255) gTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAg < 1:523016/140‑1 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCATGAGAAGTg > 1:958791/1‑136 (MQ=255) aTTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTg < 2:958791/136‑1 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGGGAAGTGGGGG‑Cag > 2:5721/1‑140 (MQ=255) gagaGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑Cag > 2:1450435/1‑140 (MQ=255) agagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑Caga < 1:562928/140‑1 (MQ=255) gagTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑Cagag < 1:273298/140‑1 (MQ=255) agTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGAGAAGTGAGGG‑Cagaga > 1:749586/1‑140 (MQ=255) tttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCATGAGAAGGGAGCG‑CAGAGAgg > 2:21816/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCCTTAGAAGTGAGGG‑CAGAGAggg > 2:759162/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCCTGAGAAGTGAGCG‑CAGAGAggg > 1:1069679/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAggg > 2:780640/1‑140 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAggg < 1:1382493/140‑1 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAggg < 1:711728/140‑1 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAggg < 2:485504/140‑1 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAggg < 1:1525568/140‑1 (MQ=255) ttATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACAAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGTCATGAGAAGTGAGGG‑CAGAGAggg > 2:111016/1‑140 (MQ=255) tATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCA‑ACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGAt < 1:1845918/140‑1 (MQ=255) aTTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGAGAAGTGAGCG‑CAGAGAggggt > 2:1091963/1‑138 (MQ=255) cAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACAAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTAt < 1:111016/140‑1 (MQ=255) tttGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCct < 1:447035/140‑1 (MQ=255) tAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAAc < 1:1121942/140‑1 (MQ=255) aCCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTTTGCCCTGAGAAGTGAGCG‑CAGAGAGGGGTTATCTTGTCTGACTGAAATg > 2:1251391/1‑140 (MQ=255) aCCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTTTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTg > 1:1200426/1‑140 (MQ=255) aCCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGGC‑ATTTTTTTTTTTTTTGCCATGAGAAGTGAGGG‑GAGAGAGGGGTTATCTTTCCTGACTGAACTg > 2:1630898/1‑140 (MQ=255) agcTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTgg < 1:554723/138‑1 (MQ=255) ataAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGAtt < 2:1015206/140‑1 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTTCCCTGAGAAGTGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAAATGGCGATTAAGttt > 2:100203/1‑140 (MQ=255) tCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGCCATGGAAAGGGAGCG‑CAGGGGGGGGATATCTTTTCTTGCTGAACTGGCGCTTAAGttt > 2:1327650/1‑140 (MQ=255) cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGAGAAGTGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAACTGGGGATTAAgctgct > 2:554723/1‑135 (MQ=255) cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGCCATGAGAAGAGAGCG‑CAGAGAGGGGTTATCTTGCCTGGCTGAACTGGCGATTAAAttttc > 2:1649402/1‑138 (MQ=255) cATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTTTTCCATGAGAAGGGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTcc > 1:787898/1‑140 (MQ=255) ccTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGt < 2:1024146/140‑1 (MQ=255) tataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAc < 1:1649402/140‑1 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGGAGGGGGCG‑CGGGGAGGGGTTATCTTTACCCATTGTACTGGCGCTTAAATTTCCGCGCAcc > 2:1167083/1‑140 (MQ=255) ataCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGGGAGGG‑CCGAGAGGGGTTATTTTTCCTGACTGAACTGGCGGTTAAGTTTTTGCGGAcc > 2:904585/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGTGAGAG‑CAGAGAGGGGTTATCTTGCCTGACTGAACCGGCGGTTAAGTTTTCGCGTAccc > 2:870078/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCATGAGAAGTGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAACTGGCGATTAAGTTTCCCCGTAccc > 2:1065417/1‑140 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc < 1:36096/140‑1 (MQ=255) taCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTAccc < 1:1450435/140‑1 (MQ=255) aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGTGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCg < 1:926189/140‑1 (MQ=255) aCCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCg < 1:5721/140‑1 (MQ=255) aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCg < 1:100203/140‑1 (MQ=255) aGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCg < 1:759162/140‑1 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑TTTTTTTCTTTTTTTGCCATGAGAAGGGAGCG‑CCGCGAGGGGGTATCTTTCCTTGCTGAACAGGGGGTTTAGTTTTCTCGTACCCGGCGt > 2:613613/1‑140 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGGTTAAGTTTTCCCGGAGCCGGCGt > 2:1468754/1‑140 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGGGAGCG‑CCGAGAGGGATTATCTTTCCTGACTGAACTGGCGGTTAAGTTTCCGCGTACCCGGCgg > 2:1260995/1‑139 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGAGAGCG‑CAGAGAGGGGTTATCTTTCCTTACTGAACTGGCGATTAAGTTTTCGCGGACCCcgcgg > 2:1838351/1‑139 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCCTTAGAAGTGAGGG‑CAGAGAGGGGGTATCTTGCCTGACTGAACTGGCGGTTAAGTTTTCGCGTACCCcgcgg > 2:1374544/1‑139 (MQ=255) gTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGCCCTGAGAAGGGAGCG‑CAGAGAGGGGTTATCTTGCCTGACTGAACTGGCGGTTAAATTTTCGCGTACCCGGCgg > 2:1124401/1‑139 (MQ=255) tCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCATGAGAAATGAGCG‑CAGAGGGGGATTATCTTGCCTGACTGAACTGGGGGTTAAGTTTTCCCGTACCCcgcggt > 2:1454496/1‑138 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTT‑CTTTTTTTTTTTTTTGCCCTTAGAAGTGAGGG‑CAGAGAGGGATTATTTTTCCTTACTGAACTGGCGGTTTAGTTTTCCCGTACCCGGCGgtt > 2:581319/1‑140 (MQ=255) cAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCCTGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGGTTAAGTTTCCGCGGACCCCGCGgtt > 1:87311/1‑140 (MQ=255) ggAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGGAGTGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAACTGGGGATTAAGTTTTCCCGTACCCGGCGttttt > 2:1228977/1‑138 (MQ=255) ggAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAg < 1:1260995/140‑1 (MQ=255) gAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGGGAGCG‑CAGAGAGGGGTTATCTTGCCTGACTGAACTGGCGGTTAAGTTTCCGCGTACCCGGCGGTTTGt > 2:82488/1‑140 (MQ=255) gAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCCTGAGAAGGGAGCG‑CAGAGAGGGGGTATCTTTCCTGACTGAACTGGGGGTTAAATTTTCGCGTACCCCGCGTTTAGt > 2:287238/1‑140 (MQ=255) gAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCATGGGAAGGGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAACTGGCGGTTAAGTTTTCGCGTACCCGGCGGTTTGt > 2:329616/1‑140 (MQ=255) tCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCCTGAGAAGAGGGCG‑CAGAGAGGGGTTATCTTTCCTGACCGAACTGGCGGTTAAAGTTTCGCGGACCCCGCGGTTTGTTAt > 2:862633/1‑140 (MQ=255) cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTAtt < 1:1124401/140‑1 (MQ=255) cATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCG‑TTAGTTATTg < 1:1091963/140‑1 (MQ=255) aTTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTg < 1:287238/140‑1 (MQ=255) aTTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTg < 1:1630898/140‑1 (MQ=255) tttCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTTTTCCCTGAGAAGTGAGCG‑CAGAGAGGGATTATTTTGCCTGACTGAACTGGCGATTAAGTTTCCCCGGACCCGGCGTTTTGTTTTTGc > 2:716072/1‑140 (MQ=255) ttCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCg < 1:21816/140‑1 (MQ=255) ttCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCg < 1:862633/140‑1 (MQ=255) cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGga < 1:23198/140‑1 (MQ=255) cAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGga < 1:1813574/140‑1 (MQ=255) ggATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatg < 1:1228977/140‑1 (MQ=255) aTGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgat < 1:329616/140‑1 (MQ=255) gCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGgatgatga < 2:749586/140‑1 (MQ=255) aTGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGatat < 2:653279/140‑1 (MQ=255) tGTCGCGGATCTCGTTTGCGGCGGTCTGTTTTTTTTTTTTTTGCCA‑GAGCAGTGTGCGCCGGAAAGGGATT‑TCTTGTCTAGCTGAAATGGCGATTTAGATTCCGCGGAGCCGCCGGTTTGTTTTTTTGgatggtgtgatt > 2:326012/1‑135 (MQ=255) gcgGATCTCGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGTGAGCG‑CAGAGGGGGGGTATCTTGCCTGACTGAACTGGCGATTAAGTTTTCGCGTACCCGGCGGTTTGTTATTGCGGGTGATGATATTGaaa > 2:1604110/1‑139 (MQ=255) gcgGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAg < 1:326012/140‑1 (MQ=255) tcGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCt < 1:1748860/140‑1 (MQ=255) cGTTTGCGGCGGTC‑ATTTTTTTTTTTTTTGCCATGAGAAGTGAGCG‑CAGAGAGGGGTTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCCGCGTTTTGTTATTGCGGATGATGATATTTAAGCTCGGCTg > 2:1599386/1‑140 (MQ=255) cGTTTGCGGCGGTC‑ATTTTTTTTTTTTCTGCCATGAGAAGGGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAACTGGCGATTAAGTTTTCGCGTACCCCGCGGTTAGTTATTTCGGGTGATGATATTGAAGCTCGGCTg > 2:884948/1‑140 (MQ=255) gTTTGCGGCGGTC‑ATTTTTTTTTTTTTTTCCATGAGAAGTGAGCG‑CAGAGAGGGGTTATCTTTCCTGACTGAACTGGCGATTAAGTTTTCGCGTACCCGGCGGTTTGTTATTTCGGATGATGATATTTAAGCTCGGCTgt > 2:574744/1‑139 (MQ=255) tttGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGAt < 1:1251391/140‑1 (MQ=255) cggcggTT‑TTTTTTTCTTTTTCTGCCAATGGAAATGTGCG‑GAGAGAGGGGTTTTCTTGCCTGACCGAAATGGCGCTTAAGTTTTCGCCTGCCCGGCGCTTTATTTTTGGGGGGGGTGATATTGAAAATCGGCGGATTGGt > 2:1301195/1‑140 (MQ=255) cggcggTC‑ATTTTTTTTTTTTTTGCCATGAGAAGGGAGCG‑CAGAGGGGGGTTATCTTGCCTGACTGAACTGGCGGTTAAGTTTCCGCGTACCCGGCGGTTTGTTATTGCGGGTGATGATATTGAAGCCCGGCtggttggt > 2:111103/1‑140 (MQ=255) gTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCAtt > 2:1159802/1‑140 (MQ=255) tC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTg < 1:780640/140‑1 (MQ=255) ttctttttctGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAt < 1:1838351/140‑1 (MQ=255) | GCGTCATGAGTAGTATCGGTATTGAGAGTTTATTCAGAAAGTTTGCGGGTAACCCTTATAAGCTCCATACCTATACCAGTCAGGAGTCATTTCAGGATGCCATGTCGCGGATCTCGTTTGCGGCGGTC‑ATTTTTTCTTTTTCTGCCATGAGAAGTGAGCG‑CAGAGAGGGATTATCTTGCCTGACTGAACTGGCGATTAAGTTTCCGCGTACCCGGCGTTTAGTTATTGCGGATGATGATATTGAAGCTCGGCTGATTGGTTCATTGTCGCCAT > NC_000913/4604209‑4604481 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |