mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 141,416 | C→T | intergenic (‑191/‑15) | gcd ← / → hpt | quinoprotein glucose dehydrogenase/hypoxanthine phosphoribosyltransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 328,939 | G→T | R132R (CGC→CGA) | betI ← | DNA‑binding transcriptional repressor BetI |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 997,857 | G→T | intergenic (‑345/‑11) | ssuE ← / → elfA | NADPH‑dependent FMN reductase/putative laminin‑binding fimbrial subunit |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,789,126 | C→A | Q48K (CAG→AAG) | csiD → | PF08943 family protein CsiD |
| RA | 2,882,065 | C→A | Q26H (CAG→CAT) | casC ← | type I‑E CRISPR system Cascade subunit CasC |
| RA | 3,252,202 | C→A | intergenic (+192/‑102) | yqjG → / → yhaH | glutathionyl‑hydroquinone reductase YqjG/putative inner membrane protein |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,540,721 | G→T | T105T (ACG→ACT) | feoB → | Fe(2(+)) transporter FeoB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,624,016 | G→T | intergenic (+234/‑362) | yhhH → / → yhhI | PF15631 family protein YhhH/putative transposase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,006,862 | C→A | P333P (CCC→CCA) | recQ → | ATP‑dependent DNA helicase RecQ |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,365,519 | C→A | A419S (GCC→TCC) | dcuA ← | C4‑dicarboxylate transporter DcuA |
| RA | 4,377,514 | C→A | G70V (GGC→GTC) | blc ← | outer membrane lipoprotein Blc |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102976 | 3104081 | 1106 | 24 [22] | [22] 25 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423766–3424233 | 3424528–3424239 | 7–763 | 26 [23] | [22] 24 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 88 (1.040) | 40 (0.530) | 29/246 | 1.2 | 34.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 77 (1.030) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 125 (1.520) | 67/270 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 158 (1.860) | 158 (1.870) | 71/276 | 0.0 | 66.7% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 126 (1.480) | 69/278 | 0.1 | 95.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 6 (0.070) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||