mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 9,469 | A→C | E55A (GAG→GCG) | mog → | molybdopterin adenylyltransferase |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 381,345 | G→T | intergenic (‑85/‑6) | yaiX ← / → insC‑1 | putative acyltransferase, N‑terminal fragment/IS2 element protein InsA |
| RA | 768,440 | C→A | R155S (CGC→AGC) | mngB → | alpha‑mannosidase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,057,452 | G→T | A168E (GCA→GAA) | torR ← | DNA‑binding transcriptional dual regulator TorR |
| RA | 1,259,626 | G→T | A393E (GCG→GAG) | dauA ← | aerobic C4‑dicarboxylate transporter DauA |
| RA | 1,287,669 | +G | intergenic (‑47/+113) | tyrT ← / ← purU | tRNA‑Tyr/formyltetrahydrofolate deformylase |
| RA | 1,295,583 | G→T | R847S (CGT→AGT) | adhE ← | aldehyde‑alcohol dehydrogenase |
| RA | 1,414,815 | G→T | R858S (CGC→AGC) | recE ← | Rac prophage; exonuclease VIII, ds DNA exonuclease, 5' ‑‑> 3' specific |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | 1,955,112 | G→A | G632G (GGC→GGT) | torZ ← | trimethylamine N‑oxide reductase 2 |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,250,619 | G→T | M301I (ATG→ATT) | yeiH → | conserved inner membrane protein YeiH |
| RA | 2,285,298 | G→T | G308V (GGC→GTC) | yejM → | putative cardiolipin transport protein |
| RA | 2,817,831 | G→T | noncoding (30/77 nt) | argQ ← | tRNA‑Arg |
| RA | 3,154,748 | C→A | E157D (GAG→GAT) | yqhC ← | DNA‑binding transcriptional activator YqhC |
| RA | 3,177,114 | G→T | T56N (ACT→AAT) | yqiB ← | DUF1249 domain‑containing protein YqiB |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,950,428 | G→T | intergenic (+8/‑79) | ilvL → / → ilvX | ilvXGMEDA operon leader peptide/uncharacterized protein IlvX |
| RA | 4,013,373 | C→A | G107G (GGC→GGA) | metE → | cobalamin‑independent homocysteine transmethylase |
| RA | 4,133,720 | C→A | intergenic (+214/‑115) | metF → / → katG | 5,10‑methylenetetrahydrofolate reductase/hydroperoxidase I |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102971 | 3104065 | 1095 | 45 [44] | [44] 48 | [mutY] | [mutY] |
| * | * | ÷ | NC_000913 | 3423770–3424234 | 3424531–3424238 | 5–762 | 49 [34] | [43] 45 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 374963 | NA (NA) | 39 (0.340) | 20/190 | 3.0 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 50 (0.300) | 166 (1.110) | 74/244 | 0.2 | 74.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 69 (0.460) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 50 (0.300) | 97 (0.650) | 64/244 | 0.5 | 63.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 69 (0.460) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 255 (1.560) | 99/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 318 (1.890) | 278 (1.660) | 103/274 | 0.0 | 63.7% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 1 (0.010) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 246 (1.460) | 103/276 | 0.1 | 96.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 10 (0.060) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||