mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,468 | C→A | G165* (GGA→TGA) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 425,745 | G→T | A245A (GCG→GCT) | queA → | tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,837,896 | C→A | Q229K (CAG→AAG) | ynjC → | putative ABC transporter membrane subunit YnjC |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,290,897 | G→T | R133L (CGC→CTC) | narP → | DNA‑binding transcriptional dual regulator NarP |
| RA | 2,465,546 | C→A | V82V (GTC→GTA) | yfdC → | inner membrane protein YfdC |
| RA | 2,972,744 | C→A | V373V (GTG→GTT) | lplT ← | lysophospholipid transporter |
| RA | 2,984,980 | G→T | Q205K (CAA→AAA) | yqeF ← | putative acyltransferase |
| RA | 3,075,256 | G→T | G309G (GGC→GGA) | yggF ← | fructose 1,6‑bisphosphatase YggF |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,356,973 | G→T | S750I (AGC→ATC) | gltB → | glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,919,690 | C→A | P56P (CCG→CCT) | atpA ← | ATP synthase F1 complex subunit alpha |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,328,651 | T→C | F506S (TTT→TCT) | crfC → | clamp‑binding sister replication fork colocalization protein |
| RA | 4,438,942 | C→A | P107P (CCG→CCT) | ytfJ ← | protein YtfJ |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104070 | 1101 | 48 [46] | [46] 47 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423760–3424234 | 3424540–3424239 | 6–781 | 48 [46] | [45] 47 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 210 (1.140) | 66 (0.400) | 40/244 | 1.8 | 28.1% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 152 (0.930) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 339 (1.890) | 121/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 368 (1.990) | 337 (1.840) | 105/274 | 0.1 | 64.5% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 5 (0.030) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 257 (1.390) | 101/276 | 0.1 | 96.6% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 9 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||