mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 308,283 | C→A | K350N (AAG→AAT) | ecpC ← | putative fimbrial usher protein EcpC |
| RA | 754,798 | T→C | intergenic (‑17/‑379) | ybgU ← / → sdhC | protein YbgU/succinate:quinone oxidoreductase, membrane protein SdhC |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,048,835 | C→A | Q166H (CAG→CAT) | gfcB ← | lipoprotein GfcB |
| RA | 1,066,333 | G→A | W250* (TGG→TAG) | agp → | glucose‑1‑phosphatase |
| JC JC | 1,412,941 | +G :: IS5 (–) +3 bp | coding (293‑295/1236 nt) | intR ← | Rac prophage; putative integrase |
| RA | 1,544,405 | G→T | pseudogene (315/336 nt) | yddJ ← | uncharacterized protein YddJ |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,839,353 | G→T | intergenic (‑89/‑171) | ascG ← / → ascF | DNA‑binding transcriptional repressor AscG/beta‑glucoside specific PTS enzyme IIBC component |
| RA | 3,123,635 | G→T | R57R (CGC→CGA) | glcB ← | malate synthase G |
| RA | 3,327,503 | C→A | T54T (ACG→ACT) | rlmE ← | 23S rRNA 2'‑O‑ribose U2552 methyltransferase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,781,948 | G→T | G205G (GGC→GGA) | cysE ← | serine acetyltransferase |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,388,984 | C→A | E129D (GAG→GAT) | mscM ← | miniconductance mechanosensitive channel MscM |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102973 | 3104077 | 1105 | 28 [25] | [27] 28 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423768–3424233 | 3424530–3424239 | 7–763 | 29 [27] | [27] 29 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 73 (0.670) | 129 (1.330) | 76/244 | 0.0 | 64.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 75 (0.770) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 73 (0.670) | 59 (0.610) | 39/244 | 1.0 | 45.8% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 75 (0.770) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 145 (1.360) | 75/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 160 (1.460) | 176 (1.620) | 94/274 | 0.0 | 68.9% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 0 (0.000) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 122 (1.110) | 73/276 | 0.1 | 96.1% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 5 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||