mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 365,942 | C→A | G122C (GGT→TGT) | lacZ ← | beta‑galactosidase |
| RA | 498,722 | G→T | G223V (GGG→GTG) | hemH → | ferrochelatase |
| RA | 597,568 | G→T | P30P (CCG→CCT) | cusB → | copper/silver export system membrane fusion protein |
| RA | 873,703 | A→G | E242G (GAA→GGA) | pdeI → | putative c‑di‑GMP phosphodiesterase PdeI |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,185,878 | T→A | V12E (GTG→GAG) | pepT → | peptidase T |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,039,591 | G→T | L38F (TTG→TTT) | msrP → | periplasmic protein‑L‑methionine sulfoxide reductase catalytic subunit |
| RA | 2,117,717 | C→A | V230F (GTT→TTT) | wcaK ← | putative colanic acid biosynthesis pyruvyl transferase |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,365,994 | G→T | V29F (GTT→TTT) | arnB → | UDP‑4‑amino‑4‑deoxy‑L‑arabinose aminotransferase |
| RA | 2,747,354 | G→T | L148I (CTT→ATT) | ffh ← | signal recognition particle protein component |
| RA | 3,057,232 | C→A | A393A (GCG→GCT) | serA ← | phosphoglycerate dehydrogenase |
| RA | 3,127,980 | G→T | P14P (CCC→CCA) | glcD ← | glycolate dehydrogenase, putative FAD‑linked subunit |
| RA | 3,303,260 | G→T | D258Y (GAC→TAC) | yhbV → | putative peptidase YhbV |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| JC JC | 3,465,750 | IS2 (+) +5 bp | coding (208‑212/678 nt) | gspO → | Type II secretion system prepilin peptidase |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,391,069 | G→T | A147A (GCC→GCA) | rsgA ← | ribosome small subunit‑dependent GTPase A |
| RA | 4,458,057 | G→T | S33S (TCG→TCT) | pmbA → | metalloprotease PmbA |
| RA | 4,458,689 | C→A | A244E (GCG→GAG) | pmbA → | metalloprotease PmbA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102986 | 3104083 | 1098 | 13 [12] | [12] 13 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423780–3424233 | 3424545–3424242 | 10–766 | 13 [12] | [11] 13 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 374963 | NA (NA) | 9 (0.220) | 8/190 | 2.5 | NA | noncoding (33/34 nt) | other | REP31a |
| ? | NC_000913 | = 377487 | NA (NA) | intergenic (+176/+48) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 72 (1.200) | 19 (0.360) | 16/244 | 1.7 | 27.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 36 (0.680) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 81 (1.390) | 51/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 110 (1.840) | 71 (1.190) | 46/274 | 0.2 | 55.4% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 5 (0.080) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 80 (1.340) | 52/276 | 0.1 | 96.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||