mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 370,270 | G→T | A554S (GCC→TCC) | mhpA → | putative 3‑(3‑hydroxyphenyl)propanoate/3‑hydroxycinnamate hydroxylase |
| RA | 401,973 | G→T | G76V (GGG→GTG) | phoA → | alkaline phosphatase |
| RA | 726,758 | Δ1 bp | coding (279/2049 nt) | kdpB ← | K(+) transporting P‑type ATPase subunit KdpB |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,723,001 | C→A | A294E (GCA→GAA) | ydhK → | putative transporter YdhK |
| RA | 1,773,356 | C→A | A282D (GCT→GAT) | ydiN → | putative transporter YdiN |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,129,725 | G→T | P385Q (CCG→CAG) | wcaD ← | putative colanic acid polymerase |
| RA | 2,159,888 | G→T | L501L (CTG→CTT) | mdtC → | multidrug efflux pump RND permease subunit MdtC |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,542,780 | C→A | W250L (TGG→TTG) | cysP ← | thiosulfate/sulfate ABC transporter periplasmic binding protein CysP |
| RA | 2,790,152 | G→T | T57T (ACG→ACT) | lhgO → | L‑2‑hydroxyglutarate oxidase |
| RA | 2,874,841 | C→A | Q193H (CAG→CAT) | cysN ← | sulfate adenylyltransferase subunit 1 |
| RA | 2,906,146 | G→T | A146S (GCT→TCT) | ygcG → | protein YgcG |
| RA | 2,966,419 | C→A | A672A (GCG→GCT) | ptsP ← | phosphoenolpyruvate‑protein phosphotransferase PtsP |
| RA | 3,168,720 | G→T | intergenic (‑176/+29) | mqsR ← / ← ygiV | mRNA interferase/toxin of the MqsR‑MqsA toxin‑antitoxin system/DNA‑binding transcriptional repressor YgiV |
| RA | 3,215,332 | C→A | D48Y (GAC→TAC) | mug ← | stationary phase mismatch/uracil DNA glycosylase |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,546,319 | G→T | intergenic (+120/‑240) | nfuA → / → gntT | iron‑sulfur cluster carrier protein NfuA/high‑affinity gluconate transporter |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 3,942,090 | T→A | noncoding (283/1542 nt) | rrsC → | 16S ribosomal RNA |
| RA | 4,074,497 | G→T | A253A (GCG→GCT) | yihV → | 6‑deoxy‑6‑sulfofructose kinase |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,367,031 | C→T | E433K (GAA→AAA) | aspA ← | aspartate ammonia‑lyase |
| RA | 4,512,520 | G→T | A297E (GCA→GAA) | fecC ← | ferric citrate ABC transporter membrane subunit FecC |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102995 | 3104050 | 1056 | 11 [10] | [10] 11 | [mutY] | [mutY] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 374922 = | NA (NA) | 22 (0.540) | 13/202 | 1.5 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 1207790 = | 14 (0.250) | 55 (1.120) | 42/244 | 0.1 | 84.4% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 8 (0.160) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 14 (0.250) | 50 (1.020) | 39/244 | 0.2 | 83.1% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 8 (0.160) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 111 (2.060) | 67/268 | 0.0 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 97 (1.750) | 81 (1.470) | 46/274 | 0.1 | 62.0% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 3 (0.050) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 93 (1.680) | 59/276 | 0.0 | 96.9% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 3 (0.050) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||