BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	119 (1.440)	114 (1.390)	60/274	0.2	65.7%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	1 (0.010)	114 (1.390)	60/274	0.2	65.7%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 246 total aligned reads displayed.

ATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362871‑3363140

    tataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaa                                                                                                                                >  2:1018329/1‑140 (MQ=255)

     aagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aaaa                                                                                                                               <  1:68759‑M1/15‑1 (MQ=255)

         agaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaaaaaa                                                                                                                           <  2:1010349/140‑1 (MQ=255)

         acgtcacatctgtcgggttttttcccatcactccagaaactgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aaaaaaaa                                                                                                                           <  1:31436‑M1/19‑1 (MQ=255)

           gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                         >  2:698530‑M1/120‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaaaaaa                                                                                                                           <  1:553293/135‑1 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:962502/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  1:497596/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:1215139/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:1242912/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  1:153075/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:480087/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑‑AAAAAAAGGCAAc                                                                                                                     >  2:644013/1‑140 (MQ=255)

                cGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACa                                                                                                                    <  1:116205/140‑1 (MQ=255)

                 gCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACAt                                                                                                                   <  2:845577/140‑1 (MQ=255)

                  ctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACAtt                                                                                                                  <  2:24921‑M1/28‑1 (MQ=255)

                             tttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCtt                                                                                                       <  2:338522‑M1/39‑1 (MQ=255)

                              ttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCttt                                                                                                      <  2:1221187‑M1/40‑1 (MQ=255)

                                        tccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAA‑GGCAACATTGCTACGCGCTTTGATGAAAATgg                                                                                           >  1:47391‑M1/91‑140 (MQ=255)

                                          tAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          <  2:497596/140‑1 (MQ=255)

                                          tAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          <  2:588519/140‑1 (MQ=255)

                                            aaaTCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGa                                                                                        >  2:461175/1‑140 (MQ=255)

                                                 tgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:1316773‑M1/57‑1 (MQ=255)

                                                 tgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  1:1316773‑M1/82‑138 (MQ=255)

                                                  gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGc                                                                                          >  2:38303‑M1/81‑132 (MQ=255)

                                                  gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:1257293‑M1/57‑1 (MQ=255)

                                                  gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  1:1257293‑M1/81‑137 (MQ=255)

                                                  cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:1381435/137‑1 (MQ=255)

                                                  cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     >  1:1381435/1‑137 (MQ=255)

                                                  cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  >  2:68115/1‑140 (MQ=255)

                                                  cTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  >  1:116427/1‑140 (MQ=255)

                                                             tCCTAATATATCGCATTATTTTTCCCTTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAgg                                                                       <  1:228351/140‑1 (MQ=255)

                                                                 aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:739420/122‑1 (MQ=255)

                                                                    gacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCt                                                                <  1:1120972‑M1/78‑1 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            >  2:573197/1‑124 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATc                                                                          <  1:28847/126‑1 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATc                                                                          >  2:28847/1‑126 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:1165439/1‑140 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:160897/1‑140 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:873644/1‑140 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:135465/1‑140 (MQ=255)

                                                                        cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:614868/1‑140 (MQ=255)

                                                                             agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  2:392679‑M1/54‑140 (MQ=255)

                                                                              gttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                      >  2:42754‑M1/53‑140 (MQ=255)

                                                                               tttttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGcc                                                      >  1:846635/1‑140 (MQ=255)

                                                                                ttttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                                    <  1:135465/140‑1 (MQ=255)

                                                                                   tCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 >  1:926765/1‑140 (MQ=255)

                                                                                    cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  2:91125/1‑133 (MQ=255)

                                                                                    cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  2:873644/140‑1 (MQ=255)

                                                                                       gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:886184‑M1/97‑1 (MQ=255)

                                                                                       gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1185741‑M1/97‑1 (MQ=255)

                                                                                         gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  1:1248618‑M1/42‑140 (MQ=255)

                                                                                             cccGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  2:233053/124‑1 (MQ=255)

                                                                                                 catttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTg                                   <  1:572996‑M1/107‑1 (MQ=255)

                                                                                                    ttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  2:200849‑M1/110‑1 (MQ=255)

                                                                                                      tGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaagaa                              <  2:614868/140‑1 (MQ=255)

                                                                                                           ggTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaaa                         >  1:450819/1‑140 (MQ=255)

                                                                                                           agaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaaaaaa                         <  1:841147‑M1/117‑1 (MQ=255)

                                                                                                            gaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAAt                        <  2:563358‑M1/118‑1 (MQ=255)

                                                                                                             aagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       >  1:24921‑M1/22‑140 (MQ=255)

                                                                                                              gAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      <  1:734647/140‑1 (MQ=255)

                                                                                                                  atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:139672‑M1/17‑140 (MQ=255)

                                                                                                                  atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:1215139/140‑1 (MQ=255)

                                                                                                                   tcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGtt                 >  2:300874‑M1/16‑140 (MQ=255)

                                                                                                                    tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:383604/140‑1 (MQ=255)

                                                                                                                    tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1228342/140‑1 (MQ=255)

                                                                                                                    cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:841147‑M1/15‑140 (MQ=255)

                                                                                                                    cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:338860‑M1/15‑140 (MQ=255)

                                                                                                                    cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:161025‑M1/15‑140 (MQ=255)

                                                                                                                      ttgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:641916‑M1/13‑140 (MQ=255)

                                                                                                                      aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:479073/1‑140 (MQ=255)

                                                                                                                      aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  2:926765/140‑1 (MQ=255)

                                                                                                                      aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  2:450819/140‑1 (MQ=255)

                                                                                                                       cTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  1:410391/1‑140 (MQ=255)

                                                                                                                       cTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:457618/140‑1 (MQ=255)

                                                                                                                       cTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             <  1:962502/140‑1 (MQ=255)

                                                                                                                          tatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:512874‑M1/126‑1 (MQ=255)

                                                                                                                          tatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:512874‑M1/9‑134 (MQ=255)

                                                                                                                           tAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         >  2:1103717/1‑140 (MQ=255)

                                                                                                                           tAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         <  1:588281/140‑1 (MQ=255)

                                                                                                                             atctaAGTAAATGGCG‑AAAATAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:779499‑M1/124‑1 (MQ=255)

                                                                                                                             atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  1:585707‑M1/135‑1 (MQ=255)

                                                                                                                             atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  1:187609‑M1/135‑1 (MQ=255)

                                                                                                                             atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  2:186683‑M1/135‑1 (MQ=255)

                                                                                                                              tctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:1017530‑M1/5‑140 (MQ=255)

                                                                                                                              tctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:586516‑M1/5‑140 (MQ=255)

                                                                                                                              tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1163035/1‑130 (MQ=255)

                                                                                                                              tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  1:944131/1‑140 (MQ=255)

                                                                                                                               aTCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:77438/1‑129 (MQ=255)

                                                                                                                               aTCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:77438/129‑1 (MQ=255)

                                                                                                                                 aAGTAAATGGCG‑AAAAAACAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:1313299‑M1/139‑1 (MQ=255)

                                                                                                                                 aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:195308‑M1/126‑1 (MQ=255)

                                                                                                                                 aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  2:161730‑M1/139‑1 (MQ=255)

                                                                                                                                 aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:1237344‑M1/139‑1 (MQ=255)

                                                                                                                                 aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTg   <  1:1132523‑M1/139‑1 (MQ=255)

                                                                                                                                  AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:659156‑M1/1‑126 (MQ=255)

                                                                                                                                  AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:1127178‑M1/1‑136 (MQ=255)

                                                                                                                                  AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:653870‑M1/140‑1 (MQ=255)

                                                                                                                                  AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:352178‑M1/140‑1 (MQ=255)

                                                                                                                                  AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:520581‑M1/140‑1 (MQ=255)

ATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362871‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.