New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 375102 =NA (NA)35 (0.540) 15/216 2.7 NA noncoding (17/36 nt) other REP31d
?NC_000913 377351 = NA (NA)noncoding (16/37 nt) other REP32a

Only 100 of 159 total aligned reads displayed.

GGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGC  >  NC_000913/374968‑375241
                                                                                                                                        |                                                                                                                                             
ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGt                                                                                                                                        <  2:1157986/140‑1 (MQ=37)
ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGt                                                                                                                                        >  2:853247/1‑140 (MQ=37)
ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCCTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGt                                                                                                                                        >  2:922662/1‑140 (MQ=38)
 gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTc                                                                                                                                       >  1:115193/1‑140 (MQ=39)
      agaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATc                                                                                                                                  <  2:295507/140‑1 (MQ=34)
        aaTTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAg                                                                                                                                >  1:769616/1‑140 (MQ=35)
          tttGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGc                                                                                                                              <  2:980345/140‑1 (MQ=34)
                ggccTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTgc                                                                                                                        <  2:714483/137‑1 (MQ=1)
                 gccTGATAAGACGCGCAAAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTgc                                                                                                                        <  2:591937/138‑1 (MQ=11)
                 gccTGATAAGACGCGCAAAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTgc                                                                                                                        <  2:195636/138‑1 (MQ=11)
                  tCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTgcgc                                                                                                                      >  2:28113/1‑140 (MQ=34)
                    tGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCa                                                                                                                                    >  1:1139437/1‑124 (MQ=32)
                    tGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCAc                                                                                                                    <  1:968124/140‑1 (MQ=34)
                           aCGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGcc                                                                                                             >  2:1396043/1‑140 (MQ=34)
                                 ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATg                                                                                                        <  2:1259979/140‑1 (MQ=34)
                                     cGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgcggcg                                                                                                   >  2:1033226/1‑140 (MQ=255)
                                       tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGt                                                                                                  >  2:1373012/1‑140 (MQ=34)
                                       tCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                                                                 >  2:780757/1‑140 (MQ=255)
                                        cGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                                                                 >  2:544582/1‑140 (MQ=35)
                                         tcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                                                                 <  1:203731‑M1/45‑1 (MQ=255)
                                         gCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGa                                                                                                >  2:917363/1‑140 (MQ=37)
                                         gCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGaa                                                                                               >  2:1134224/1‑140 (MQ=255)
                                                          aCGACTGCCGGATGCGGCGTTAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                               >  1:1275896/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTa                                                                               >  2:1027985/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTa                                                                               >  1:1022801/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTa                                                                               >  2:867013/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTa                                                                               >  1:71319/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTa                                                                               >  1:236307/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGGCTa                                                                               >  1:931197/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                                               >  2:962894/1‑140 (MQ=37)
                                                          aCGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGGTA‑‑GCGTCGCATCAGGCCTCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCgttgta                                                                               >  2:1185157/1‑135 (MQ=255)
                                                           cGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                              >  2:1169747/1‑140 (MQ=37)
                                                            cgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCtt                                                                                         >  2:1255080‑M1/77‑129 (MQ=255)
                                                            cgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCtt                                                                                         <  1:1255080‑M1/53‑1 (MQ=255)
                                                            cgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                                              <  1:436397‑M1/64‑1 (MQ=255)
                                                             gactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATc                                                                                      >  1:152627‑M1/76‑131 (MQ=255)
                                                             gactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATc                                                                                      <  2:152627‑M1/56‑1 (MQ=255)
                                                              cTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACggg                                                                           <  2:1281339/140‑1 (MQ=38)
                                                                gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcacttc                                                                         <  2:236307/140‑6 (MQ=255)
                                                                 ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcacttcg                                                                        <  1:1185157/140‑7 (MQ=255)
                                                                 ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcacttcgc                                                                       <  1:11684/140‑8 (MQ=11)
                                                                  cGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcacttcgc                                                                       <  1:867013/140‑8 (MQ=255)
                                                                  cGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcacttcgc                                                                       <  1:292254/140‑8 (MQ=255)
                                                                   ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                      <  1:544582/140‑1 (MQ=40)
                                                                   ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTCGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                      <  2:811223/140‑1 (MQ=255)
                                                                    ggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                      >  2:203731‑M1/69‑140 (MQ=255)
                                                                    ggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                      >  2:367268‑M1/69‑140 (MQ=255)
                                                                        cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 <  2:171524/140‑1 (MQ=255)
                                                                        cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 <  2:1354228/140‑1 (MQ=255)
                                                                        cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 <  2:1271294/140‑1 (MQ=255)
                                                                        cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 <  1:1179674/140‑1 (MQ=255)
                                                                        cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 <  2:93863/140‑1 (MQ=255)
                                                                        cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 <  1:917363/140‑1 (MQ=255)
                                                                         cggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 >  2:700215‑M1/64‑140 (MQ=255)
                                                                         cggcgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                                                 >  2:1326453‑M1/64‑140 (MQ=255)
                                                                            cgtgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCga                                                                   >  2:128876‑M1/61‑135 (MQ=255)
                                                                              gAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGT                                                           <  2:1170776‑M1/140‑1 (MQ=255)
                                                                               aaCGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAA‑‑GCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcactt                                                                          <  1:297103/124‑5 (MQ=11)
                                                                                     ttATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTG                                                    >  2:102598‑M1/1‑140 (MQ=255)
                                                                                     cttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                                                      <  2:247756‑M1/72‑1 (MQ=255)
                                                                                          cGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAG                                               <  1:853247‑M1/140‑1 (MQ=255)
                                                                                            gCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGAC                                             >  1:1326830‑M1/1‑140 (MQ=255)
                                                                                             ccTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACG                                            <  2:764843‑M1/140‑1 (MQ=255)
                                                                                                 cGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGtt                                        >  1:397688/1‑140 (MQ=255)
                                                                                                        gcccgtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                  <  1:706588‑M1/108‑1 (MQ=255)
                                                                                                           gggAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAA                                                >  2:298726‑M1/1‑122 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATTAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                <  1:230467‑M1/94‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATTAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                >  2:230467‑M1/29‑122 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                <  1:806680‑M1/94‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                >  1:74973‑M1/29‑122 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                <  2:74973‑M1/94‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                <  1:1141689‑M1/94‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                                                >  2:1141689‑M1/29‑122 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                              <  1:36119‑M1/112‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                              <  2:295542‑M1/112‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                              <  1:655524‑M1/112‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                              <  2:1004453‑M1/112‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                              <  1:279699‑M1/112‑1 (MQ=255)
                                                                                                            gtaagccgtaggcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt                              <  1:948257‑M1/112‑1 (MQ=255)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGCAAA‑‑GCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             >  1:1149365/8‑140 (MQ=11)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGCAAA‑‑GCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             >  2:676405/8‑140 (MQ=11)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGTTAGCGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCa                               >  2:276768/8‑140 (MQ=11)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             >  1:358253/8‑140 (MQ=255)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             >  2:443934/8‑140 (MQ=255)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             >  1:773801/8‑140 (MQ=255)
                                                                                                            gtaagccgTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             >  1:1244106/8‑140 (MQ=255)
                                                                                                             taagccgTAGGCCTGATAAGACGCGCAAA‑‑GCGTCGCATCAGGCATGGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa                            >  2:457893/7‑140 (MQ=11)
                                                                                                             taagccgTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa                            >  1:18926/7‑140 (MQ=255)
                                                                                                             taaaccgtaggcctgataagacgcgcaTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc                             <  2:1160395‑M1/113‑1 (MQ=255)
                                                                                                             taaaccgTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGTGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa                            >  1:126770/7‑140 (MQ=255)
                                                                                                                      ggCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc                   <  1:669022/140‑1 (MQ=37)
                                                                                                                      ggCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc                   >  1:1021677/1‑140 (MQ=37)
                                                                                                                      ggCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc                   <  1:1373012/140‑1 (MQ=37)
                                                                                                                       gcctgataagacgcgcaAA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTgc                   >  2:36119‑M1/18‑140 (MQ=255)
                                                                                                                       gCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATCTGTAGGCCTGATAAGACGCGcatagcgtcgcatcaggcat                      <  2:787619‑M1/136‑21 (MQ=255)
                                                                                                                       gCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATCTGTAGGCCTGATAAGACGCGcatagcgtcgcatcaggcat                      >  1:787619‑M1/1‑116 (MQ=255)
                                                                                                                         cTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCa                <  2:518382/140‑1 (MQ=34)
                                                                                                                         cTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCa                <  2:1102158/140‑1 (MQ=34)
                                                                                                                         cTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCa                <  1:1273204/140‑1 (MQ=34)
                                                                                                                                   gcgTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCgg      >  2:1273204/1‑140 (MQ=34)
                                                                                                                                        |                                                                                                                                             
GGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTA‑‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGC  >  NC_000913/374968‑375241

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.