BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,431,268	C→A	R469R (CGG→AGG)	cycA →	serine/alanine/glycine/cycloserine:H(+)symporter

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,431,268	0	C	A	100.0%	405.4 / NA	122	R469R (CGG→AGG)	cycA	serine/alanine/glycine/cycloserine:H(+)symporter
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (60/62); total (60/62)

Only 100 of 122 total aligned reads displayed.

GCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGCGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCATCAATCAGTTCATTAA  >  NC_000913/4431133‑4431403

gCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGaa                                                                                                                                     >  2:563192/1‑140 (MQ=255)

gCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGaa                                                                                                                                     >  1:1599388/1‑140 (MQ=255)

gCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGaa                                                                                                                                     >  1:1212673/1‑140 (MQ=255)

gCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGaa                                                                                                                                     >  1:264413/1‑140 (MQ=255)

gCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGG‑TACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGaaa                                                                                                                                    >  2:187916/1‑140 (MQ=255)

  gTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAAt                                                                                                                                   >  2:1521457/1‑140 (MQ=255)

   ttCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAAt                                                                                                                                   <  1:1094412/139‑1 (MQ=255)

   ttCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAAt                                                                                                                                   >  2:1094412/1‑139 (MQ=255)

   ttCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATa                                                                                                                                  <  2:604952/140‑1 (MQ=255)

     cTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAAc                                                                                                                                >  2:1227428/1‑140 (MQ=255)

      tttGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAAcc                                                                                                                               >  1:462824/1‑140 (MQ=255)

      tttGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAAcc                                                                                                                               >  2:1497700/1‑140 (MQ=255)

      tttGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGG‑TTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCg                                                                                                                              >  1:1300139/1‑140 (MQ=255)

       ttGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCg                                                                                                                              <  1:1428035/140‑1 (MQ=255)

        tgtgTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGc                                                                                                                             >  2:130706/1‑140 (MQ=255)

              cGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATc                                                                                                                       >  2:1102030/1‑140 (MQ=255)

              cGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATc                                                                                                                       >  2:159893/1‑140 (MQ=255)

               gTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCa                                                                                                                      >  1:668733/1‑140 (MQ=255)

                      tgtTGCTGACACTGGAAGATGGCACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGa                                                                                                               >  2:1086006/1‑140 (MQ=255)

                      tgtTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGa                                                                                                               >  2:1614754/1‑140 (MQ=255)

                      tgtTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGa                                                                                                               <  1:76349/140‑1 (MQ=255)

                       gtTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGAt                                                                                                              <  1:1426377/140‑1 (MQ=255)

                          gCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGgc                                                                                                           >  2:86309/1‑140 (MQ=255)

                           cTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGgcg                                                                                                          >  1:905754/1‑140 (MQ=255)

                           cTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGgcg                                                                                                          <  1:961519/140‑1 (MQ=255)

                             gACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTa                                                                                                                         >  1:1194507/1‑123 (MQ=255)

                             gACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTa                                                                                                                         <  2:1194507/123‑1 (MQ=255)

                                acTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATg                                                                                                     >  1:1508263/1‑140 (MQ=255)

                                  tGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGcc                                                                                                   >  2:1248135/1‑140 (MQ=255)

                                     aaGATGGCACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATc                                                                                                <  1:1086006/140‑1 (MQ=255)

                                     aaGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATc                                                                                                <  1:957094/140‑1 (MQ=255)

                                      aGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATcc                                                                                               <  1:1497700/140‑1 (MQ=255)

                                            cacTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCttt                                                                                         >  2:1206102/1‑140 (MQ=255)

                                              cTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTa                                                                                       >  1:1125104/1‑140 (MQ=255)

                                               tCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAg                                                                                      >  1:220843/1‑140 (MQ=255)

                                               tCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAg                                                                                      >  1:359000/1‑140 (MQ=255)

                                                 gCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGAt                                                                                    >  2:741416/1‑140 (MQ=255)

                                                  ccAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAATCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCtt                                                                                          <  2:693373/133‑1 (MQ=255)

                                                  ccAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGAtc                                                                                   <  2:731166/140‑1 (MQ=255)

                                                  ccAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGAtc                                                                                   >  1:833189/1‑140 (MQ=255)

                                                  ccAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGCTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGAtc                                                                                   >  2:558127/1‑140 (MQ=255)

                                                       cgcTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGAtcactca                                                                              >  2:1295384/1‑140 (MQ=255)

                                                       cgcTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGAtcactca                                                                              >  2:1280343/1‑140 (MQ=255)

                                                         ctgctgGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCAcc                                                                            >  2:812401/1‑140 (MQ=255)

                                                           gctgGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCg                                                                          >  1:483539/1‑140 (MQ=255)

                                                              ggTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCa                                                                       <  1:1521457/140‑1 (MQ=255)

                                                               gTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAg                                                                      <  2:1642497/140‑1 (MQ=255)

                                                               gTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAg                                                                      <  2:420212/140‑1 (MQ=255)

                                                               gTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCGGGATGGCGCAATGCCATCCAGTTTTTAGACCCCTCCCCCGCCAg                                                                      <  2:618648/140‑1 (MQ=255)

                                                                 tACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAgcg                                                                    <  2:905754/140‑1 (MQ=255)

                                                                 tACCCCGCTGTGGTTTATCGCGCTGGGGTGGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCGGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAgcg                                                                    <  2:1111693/140‑1 (MQ=255)

                                                                      cGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGt                                                               >  1:349813/1‑140 (MQ=255)

                                                                      cGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGt                                                               <  2:833189/140‑1 (MQ=255)

                                                                       gCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCCCCCCCCCGCCAGCGCGCGTg                                                              <  2:159529/140‑1 (MQ=255)

                                                                          gtgGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGa                                                           <  2:668733/140‑1 (MQ=255)

                                                                           tgGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGaa                                                          <  1:1227428/140‑1 (MQ=255)

                                                                           tgGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGaa                                                          <  1:1553279/140‑1 (MQ=255)

                                                                             gTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACa                                                        >  2:1640240/1‑140 (MQ=255)

                                                                                tATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCCCCCGCCAGCGCGCGTGGGAACAGTa                                                     <  1:159893/140‑1 (MQ=255)

                                                                                   cgcgCTGGGGTTGGTCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACAt                                                  >  1:531128/1‑140 (MQ=255)

                                                                                    gcgcTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACAtt                                                 <  1:489518/140‑1 (MQ=255)

                                                                                     cgcTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTg                                                >  2:363129/1‑140 (MQ=255)

                                                                                      gcTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACAtt                                                 <  2:833158/138‑1 (MQ=255)

                                                                                      gcTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACAtt                                                 >  1:833158/1‑138 (MQ=255)

                                                                                       cTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACa                                                   >  1:56830/1‑135 (MQ=255)

                                                                                       cTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACa                                                   <  2:56830/135‑1 (MQ=255)

                                                                                       cTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGtt                                              >  2:526627/1‑140 (MQ=255)

                                                                                         ggggTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGtttt                                            <  2:359000/140‑1 (MQ=255)

                                                                                            gTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCa                                         <  2:462824/140‑1 (MQ=255)

                                                                                             ttGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAg                                        >  2:523368/1‑140 (MQ=255)

                                                                                              tGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGa                                       <  2:1599388/140‑1 (MQ=255)

                                                                                              tGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGa                                       <  1:812401/140‑1 (MQ=255)

                                                                                              tGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGa                                       <  1:187916/140‑1 (MQ=255)

                                                                                                  ctggctgTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTa                                                     <  1:1615324/122‑1 (MQ=255)

                                                                                                    ggctgTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGAtg                                 >  1:132567/1‑140 (MQ=255)

                                                                                                     gctgTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAg                                        >  2:882393/1‑132 (MQ=255)

                                                                                                     gctgTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAg                                        <  1:882393/132‑1 (MQ=255)

                                                                                                     gctgTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGAtgt                                >  2:165794/1‑140 (MQ=255)

                                                                                                     gctgTTTATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGAtgt                                >  1:700102/1‑140 (MQ=255)

                                                                                                          ttATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATcc                           <  1:1280343/140‑1 (MQ=255)

                                                                                                          ttATTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATcc                           <  1:1295384/140‑1 (MQ=255)

                                                                                                            aTTGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTTGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCAt                         <  2:1212673/140‑1 (MQ=255)

                                                                                                              tGGTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCa                       <  1:1614754/140‑1 (MQ=255)

                                                                                                               ggTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAg                      >  1:336019/1‑140 (MQ=255)

                                                                                                               ggTAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAg                      >  1:1497165/1‑140 (MQ=255)

                                                                                                                 tAAGAAGCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGt                    <  1:165794/140‑1 (MQ=255)

                                                                                                                   agaagCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGtca                  >  1:581911/1‑140 (MQ=255)

                                                                                                                   agaagCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGtca                  <  1:523368/140‑1 (MQ=255)

                                                                                                                   agaagCGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGtca                  <  2:264413/140‑1 (MQ=255)

                                                                                                                        cGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCatcaat             <  2:1416055/140‑1 (MQ=255)

                                                                                                                        cGGGCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCatcaat             <  1:228813/140‑1 (MQ=255)

                                                                                                                          ggCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCTATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCatcaatc            >  1:994004/1‑139 (MQ=255)

                                                                                                                          ggCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCatcaatca           >  2:881079/1‑140 (MQ=255)

                                                                                                                          ggCTGCTGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCatcaatca           >  1:1314517/1‑140 (MQ=255)

                                                                                                                           gctgctGAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCCCCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCATCAATCAg          <  1:1102030/140‑1 (MQ=255)

                                                                                                                               ctgAACTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCa                       <  2:1434898/123‑1 (MQ=255)

                                                                                                                                   aCTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGTTCATCAATCAGTTCATTaa  <  2:1300139/140‑1 (MQ=255)

                                                                                                                                   aCTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCATCAATCAGTTCATTaa  <  1:609612/140‑1 (MQ=255)

                                                                                                                                   aCTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCATCAATCAGTTCATTaa  <  2:1508263/140‑1 (MQ=255)

                                                                                                                                   aCTGAGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCATCAATCAGTTCATTaa  <  1:293383/140‑1 (MQ=255)

GCGTTCTTTGTGTTCGTGGTCGTGTTGCTGACACTGGAAGATGACACTCGCCAGGCGCTGCTGGTTACCCCGCTGTGGTTTATCGCGCTGGGGTTGGGCTGGCTGTTTATTGGTAAGAAGCGGGCTGCTGAACTGCGGAAATAACCGCATTATCATGCTGGATGGCGCAATGCCATCCAGCTTTTAGATCACTCACCCGCCAGCGCGCGTGGGAACAGTACATTGTTTTCCAGACTGATGTGATCCATCAGGTCATCAATCAGTTCATTAA  >  NC_000913/4431133‑4431403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`