| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 41.9% | 84.4 / 49.4 | 74 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| Reads supporting (aligned to +/- strand): ref base A (39/4); new base C (0/31); total (39/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.86e-17 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGC > NC_000913/2001781‑2002043 | tGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAAcc > 1:372888/1‑140 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCccg > 1:1163296/1‑140 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCccg > 1:661135/1‑140 (MQ=255) tCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCccgcc > 1:1665978/1‑140 (MQ=255) tCACGAAAAACAGCCCTGGTTTATATGATTTATCGGCATGATTATCCTTTTCTGC‑GGGTTTTTAAACGGGACGATTGGGGGGT‑AAAAGGGGGGTTTTTT‑GGGGGTTTACAGGTAAATCCCAGGAAAAAAAAACCCccgcc < 2:372888/140‑1 (MQ=255) aaaCACCCCGGCTTTATATGAGTTATCGGAATTTTTATCCTTTTCTGCGGGTTTTTTAAGC‑GGACGATTGGGGGGTAAAATGGGGGTTTTTTG‑GGGGG‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCg < 2:1163296/140‑1 (MQ=255) ccgCCTTGTGTTTTATGAGTTTTCGGTATGATTATCGTTTTCTGCGGGTTTTTAAACC‑GGAATATTAGTGGGAGAAAGGAGGGGTTATTG‑GGGGG‑TTACAGGAAAATCCCAGGCAAAAAAAAACCCCGCCGGTGGCgggg < 2:1356115/138‑1 (MQ=255) gCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGaa > 2:470160/1‑140 (MQ=255) cGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGt > 1:563186/1‑140 (MQ=255) ttttatGATTTTCCGGAATGTTTATCCTTTTCTGCGGGTTTTTAAATC‑GGACGTTTAGGGGGTAAAAGGGGGGTTTTTTG‑GGGGG‑TTACAGGAAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTg < 2:661135/137‑1 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 1:785697/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 1:357632/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 1:637682/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 1:1737995/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 1:173690/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 2:1835612/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 1:126979/1‑140 (MQ=255) ttATCGGCATGATTATCCGTTTCTGCAGGTTTTTTAATC‑GGACGATTAGTGGGTAAAAGGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt < 1:48676/140‑1 (MQ=255) tATGGGCATGTTTATCTTTTTCTGGGGGTTTTTTAACG‑GGACGATTGGGGGGTAAAATGGGGGTTTTTTG‑GGGGG‑TTACAGGTAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt < 2:170960/140‑1 (MQ=255) tATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt > 1:450375/1‑140 (MQ=255) aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg > 1:170960/1‑140 (MQ=255) cGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg > 2:301781/1‑140 (MQ=255) gCATGTTTATCCGTTTCGGCGGGTTTTTTAATC‑GGACGATTAGTGGGTAAAATGAGGGGTTATTG‑GGGGT‑TTACAGGTAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCt < 2:871990/140‑1 (MQ=255) aTGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt > 1:652317/1‑140 (MQ=255) tATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGtt > 1:871990/1‑140 (MQ=255) ttCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGAt > 2:1729431/1‑140 (MQ=255) ttCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGAt > 1:1092237/1‑140 (MQ=255) tCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATg > 1:1272634/1‑140 (MQ=255) cTGCAGGTTTTTTAATC‑GGACGATTGGTGGGTGAAATGAGGGTTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc < 1:84515/140‑1 (MQ=255) cTGCAGGTTTTTTAATC‑GGACGATTGGGGGGTAAAAGGAGGGTTTTTTG‑GGGGT‑TTACAGGTAAATCCCAGGAAAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc < 2:652317/140‑1 (MQ=255) cTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgc > 1:551217/1‑140 (MQ=255) cTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCC‑CCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcg < 2:1490334/140‑1 (MQ=255) ggTTTTTAATC‑GGACGATTAGTGGGTGAAATGGGGGTTTTTTG‑GGGGG‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTa < 2:135476/140‑1 (MQ=255) ttttttAATG‑GGACGATTGGTGGGTGAAATGAGGGTTTTTTT‑GGGGT‑TTACAGGTAAATTCCGGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa < 2:785697/139‑1 (MQ=255) ggaggtttAGTGGGTAAAATGGGGGTTTATTG‑GGGGG‑TTACAGGTAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc < 2:1737995/134‑1 (MQ=38) ggACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATc > 2:1752491/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 1:135476/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 1:240229/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 1:647574/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 2:1548848/1‑140 (MQ=255) aCGATTAGGGGGTGAAAGGGGGGGTTATTG‑GGGGG‑TTACAGGTAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg < 1:534381/140‑1 (MQ=38) cGATTAGTGGGTGAAATGAGGGGTTTTTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCgg < 1:351754/140‑1 (MQ=255) gATTGGTGGGTAAAAGGAGGGTTTATTG‑GGGGT‑TTACAGGAAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc < 2:126979/140‑1 (MQ=37) gATTAGGGGGTAAAAGGGGGGTTTATTG‑GGGGG‑TTACAGGTAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc < 2:647574/140‑1 (MQ=38) attggggggTGAAATGAGGGGTTATTG‑GGGGG‑TTACAGGTAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGcc < 2:1092237/134‑1 (MQ=38) ggTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaa > 1:632854/1‑140 (MQ=255) ggTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACCCCTTATCCGGCCTACaaaa > 2:72641/1‑140 (MQ=255) aaaTGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgt > 2:1183587/1‑140 (MQ=255) ggggtTTATTG‑GGGGT‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaaa < 2:551217/139‑1 (MQ=38) gggggTTTTTTGGGGGG‑TTACAGGAAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaa < 2:1377585/139‑1 (MQ=37) aGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaaa > 2:666714/1‑140 (MQ=255) aGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCaaa > 1:1377585/1‑140 (MQ=255) gggTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt > 1:51173/1‑140 (MQ=255) gggTTATTG‑GGGGG‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt < 2:632854/140‑1 (MQ=255) tttgggggg‑TTACAGAAAAATTCGAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa < 1:1063335/136‑1 (MQ=37) ttt‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATaa > 1:554775/1‑140 (MQ=255) gggggg‑TAACAGGTAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAt < 2:450375/139‑1 (MQ=37) ggggg‑TTACAGTTAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:357632/140‑1 (MQ=37) ggggg‑TTACAGGTAAATTCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGACGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 1:1835612/140‑1 (MQ=255) ggggg‑TTACAGGTAAATTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:563186/140‑1 (MQ=255) ggggg‑TTAAAGGTAAATCCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:637682/140‑1 (MQ=37) gggg‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTg > 1:1570984/1‑140 (MQ=255) ggg‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc > 2:352565/1‑140 (MQ=255) ggg‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc > 1:887573/1‑140 (MQ=255) ggtttACAGGAAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc < 2:277755/137‑1 (MQ=37) gg‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa > 1:697545/1‑140 (MQ=255) gg‑TTACAGGTAAATTCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCa < 1:352565/140‑1 (MQ=255) aCAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc > 2:250457/1‑140 (MQ=255) cAGGAAAATCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 2:1665978/140‑1 (MQ=255) aaaTTCCAGGAAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:240229/140‑1 (MQ=255) aaaTCCCAGGCAAAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:697545/140‑1 (MQ=255) aTTCCAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTa < 1:666714/140‑1 (MQ=255) ccAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc < 1:910435/140‑1 (MQ=255) ccAGGCAGAAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc < 1:250457/140‑1 (MQ=255) ccAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGc < 1:1548848/140‑1 (MQ=255) aaaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 2:648170/122‑1 (MQ=255) aaaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa > 1:648170/1‑122 (MQ=255) | TGAATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATC‑GGACGATTAGTGGGTGAAATGAGGGGTTATTT‑GGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGC > NC_000913/2001781‑2002043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |