Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,104,645	G→T	Q111K (CAG→AAG)	cpxA ←	sensory histidine kinase CpxA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,104,645	0	G	T	100.0%	243.8 / NA	69	Q111K (CAG→AAG)	cpxA	sensory histidine kinase CpxA
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base T (32/37);  total (32/37)

ATCGGATTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTGACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGACGCCGCCACC  >  NC_000913/4104511‑4104776                                                                                                                                       |                                                                                                                                    aTCGGATTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCaa                                                                                                                                >  1:1170323/1‑140 (MQ=255)   cGGATTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATa                                                                                                                              >  2:1171336/1‑140 (MQ=255)   cGGATTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATa                                                                                                                              >  2:545529/1‑140 (MQ=255)   cGGATTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATa                                                                                                                              <  1:1381222/140‑1 (MQ=255)      aTTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAg                                                                                                                           >  2:299642/1‑140 (MQ=255)       ttGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGt                                                                                                                          <  2:1310676/140‑1 (MQ=255)       ttGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGt                                                                                                                          <  1:739187/140‑1 (MQ=255)          agaACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTAc                                                                                                                       <  2:465413/140‑1 (MQ=255)          agaACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTAc                                                                                                                       >  1:266644/1‑140 (MQ=255)               tgctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATg                                                                                                                  >  1:823336/1‑140 (MQ=255)                 ctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCCGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGAt                                                                                                                >  2:1265586/1‑140 (MQ=255)                 ctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGAt                                                                                                                >  1:1030975/1‑140 (MQ=255)                 ctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGAt                                                                                                                >  2:2244/1‑140 (MQ=255)                 ctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGAt                                                                                                                <  1:497818/140‑1 (MQ=255)                 ctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGAt                                                                                                                <  1:490361/140‑1 (MQ=255)                 ctgGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGAt                                                                                                                <  2:1251911/140‑1 (MQ=255)                    gCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTg                                                                                                             >  2:807127/1‑140 (MQ=255)                         aCGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCAttt                                                                                                        >  2:1060782/1‑140 (MQ=255)                         aCGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCAttt                                                                                                        >  1:383909/1‑140 (MQ=255)                             aTCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCt                                                                                                    <  2:889508/140‑1 (MQ=255)                                          ggTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCg                                                                                       >  2:1226266/1‑140 (MQ=255)                                          ggTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCg                                                                                       >  1:1462487/1‑140 (MQ=255)                                            tAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGAt                                                                                     >  1:37133/1‑140 (MQ=255)                                                tATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCAcg                                                                                 <  2:1170323/140‑1 (MQ=255)                                                tATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCAcg                                                                                 <  1:1226266/140‑1 (MQ=255)                                                  tCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGTGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCAcgcg                                                                               >  2:569369/1‑140 (MQ=255)                                                     tCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGcc                                                                            >  1:818560/1‑140 (MQ=255)                                                     tCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGcc                                                                            >  2:1112857/1‑140 (MQ=255)                                                     tCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGcc                                                                            >  2:639291/1‑140 (MQ=255)                                                     tCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGcc                                                                            >  2:1434082/1‑140 (MQ=255)                                                         cATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCg                                                                        <  2:1462487/140‑1 (MQ=255)                                                              cgcacgGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCggtggt                                                                   <  2:851450/140‑1 (MQ=255)                                                              cgcacgGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCggtggt                                                                   <  1:299642/140‑1 (MQ=255)                                                               gcacgGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTc                                                                  <  1:1171336/140‑1 (MQ=255)                                                                   ggAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCa                                                              <  1:1434082/140‑1 (MQ=255)                                                                     agaACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAAt                                                            >  2:740513/1‑140 (MQ=255)                                                                     agaACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAAt                                                            <  2:1030975/140‑1 (MQ=255)                                                                            accgaccCGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAAc                                                     <  1:1265586/140‑1 (MQ=255)                                                                             ccgaccAGTTCCACGTGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACg                                                    <  1:569369/140‑1 (MQ=255)                                                                             ccgaccAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAAc                                                         <  2:268775/135‑1 (MQ=255)                                                                             ccgaccAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAAc                                                         >  1:268775/1‑135 (MQ=255)                                                                             ccgaccAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACg                                                    <  1:907634/140‑1 (MQ=255)                                                                             ccgaccAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACg                                                    <  1:1112857/140‑1 (MQ=255)                                                                               gaccAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCt                                                  >  2:130586/1‑140 (MQ=255)                                                                                     ttCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTg                                            <  1:2244/140‑1 (MQ=255)                                                                                           gcgGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTg                                      <  2:37133/140‑1 (MQ=255)                                                                                            cgGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGc                                     <  1:545529/140‑1 (MQ=255)                                                                                              gCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGccc                                   >  2:239277/1‑140 (MQ=255)                                                                                               ccATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCa                                  >  2:587362/1‑140 (MQ=255)                                                                                               ccATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCa                                  <  1:740513/140‑1 (MQ=255)                                                                                                       tttCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCaa                          <  2:823336/140‑1 (MQ=255)                                                                                                       tttCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCaa                          <  2:266644/140‑1 (MQ=255)                                                                                                       tttCTTCTGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCaa                          <  1:1391838/140‑1 (MQ=255)                                                                                                         tcttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCg                                         >  2:1128180/1‑123 (MQ=255)                                                                                                         tcttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCg                                         <  1:1128180/123‑1 (MQ=255)                                                                                                         tcttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGt                                       <  2:420033/125‑1 (MQ=255)                                                                                                         tcttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGt                                       >  1:420033/1‑125 (MQ=255)                                                                                                         tcttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATc                        >  1:848056/1‑140 (MQ=255)                                                                                                         tcttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATc                        >  2:1468083/1‑140 (MQ=255)                                                                                                           ttctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGc                      <  2:657925/140‑1 (MQ=255)                                                                                                            tctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGcc                     >  1:543601/1‑140 (MQ=255)                                                                                                             ctGCGGATGATCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGccc                    <  2:383909/140‑1 (MQ=255)                                                                                                                      atCGGCGTTATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGAc           <  1:130586/140‑1 (MQ=255)                                                                                                                             ttATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACa              <  2:1177030/130‑1 (MQ=255)                                                                                                                             ttATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACa              >  1:1177030/1‑130 (MQ=255)                                                                                                                             ttATCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGACgccgccc    >  1:661850/1‑139 (MQ=255)                                                                                                                               aTCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGACGCCGccacc  <  1:239277/140‑1 (MQ=255)                                                                                                                               aTCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGACGCCGccacc  <  1:1468083/140‑1 (MQ=255)                                                                                                                               aTCGGCCTTACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGACGCCGccacc  <  1:587362/140‑1 (MQ=255)                                                                                                                                       |                                                                                                                                    ATCGGATTGAGAACTGCTGGCCGGACGAATCAGATAAAGTTGGTAATTATCTTCGCCATCACGCACGGAGAACGGACCGACCAGTTCCACGCGGCCATACTTTTTCTTCTGCGGATGATCGGCGTTATCGGCCTGACCAATAAAGTTACGAATGATCTGCATTTCGCTGCGTTCAGCGCCGATCACGCGGCCTTCGGTGGTCACCAATAACAAACGCTGTCCTGGCGGTGCCCACTTATCAATCGCCCGGAACAGACGCCGCCACC  >  NC_000913/4104511‑4104776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑