Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	29,496	0	T	A	29.7%	144.4 / 36.0	74	intergenic (+301/‑155)	dapB/carA	4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha
Reads supporting (aligned to +/- strand):  ref base T (47/5);  new base A (0/22);  total (47/27)
Fisher's exact test for biased strand distribution p-value = 2.21e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAAT  >  NC_000913/29364‑29633                                                                                                                                       |                                                                                                                                            cATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAatattttgtgg                                                                                                                                      <  2:1061900/140‑8 (MQ=255)   tttGGTCCTTTTTTTTCTGCTTTTTTTTTTTTCATGCATTCTTCTTGCTGCGCAAGCTTTTTCAAGAACAGG‑TTAGATGATTTTTTTGTCGCTTAAT‑GCCTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAAT‑‑cc                                                                                                                                  <  2:1889043/140‑1 (MQ=255)   ttgggTCCTTTTTTTTCTGCTCTTTTTTTTTTCATGCAATCTTCTTGCTGCGCAAGCTTTTTCCAGAACAGT‑TTAGATGATTTTTTTGTCGTTTAAT‑GCCTGAAAAACATGCATGACCCAAAAAAAAATATAAAAAAT‑‑cc                                                                                                                                  <  2:1807522/137‑1 (MQ=255)    ttGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑ccc                                                                                                                                 >  1:734032/1‑140 (MQ=255)           aCTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTa                                                                                                                          >  1:1531391/1‑140 (MQ=255)                      cTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACtttt                                                                                                               >  1:1274609/1‑140 (MQ=255)                      cTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACtttt                                                                                                               >  2:1574845/1‑140 (MQ=255)                          ttttttttTCATGCATTCTTCTTGCTGCGCAAGTTTTTCCAAGAACAGT‑TTAGATTTTTTTTTTGTCGCTTAAT‑GCCTAAAAAACATGCTTGAGCCAAAAAAAAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAgcg                                                                                                           <  2:1105187/140‑1 (MQ=255)                                     tGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                >  1:47468/1‑140 (MQ=255)                                     tGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                >  1:137916/1‑140 (MQ=255)                                     tGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                >  1:1506652/1‑140 (MQ=255)                                     tGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑ATAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTcc                                                                                                >  1:780175/1‑140 (MQ=255)                                          tcttctTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAAt                                                                                           >  1:263789/1‑140 (MQ=255)                                                 gctgcAAAAGCTTTTCCAAAAAAAGT‑TTAGATTTTTTTTTTGTCGCTTAAT‑GCTTGAAAAACATGCATGACCCAAAAAATAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGccgccg                                                                                    <  2:1455199/140‑1 (MQ=255)                                                   tgcGCAAGCTTTTTCAAAAACAGG‑ATAGATGTTTTTTTTGTCGTTTAAT‑GCCTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGtt                                                                                  <  2:780175/140‑1 (MQ=255)                                                    gcgcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGttt                                                                                 >  1:1961375/1‑140 (MQ=255)                                                    gcgcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGttt                                                                                 >  1:1455199/1‑140 (MQ=255)                                                     cgcAAGCTTTTTCAAAAACAGG‑TTAAATGTTTTTTTTGTCGTTTATT‑GCCTAAAAAACATGCATGACCCAAAAAAAAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTg                                                                                <  2:144234/140‑1 (MQ=255)                                                     cgcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTg                                                                                >  2:477007/1‑140 (MQ=255)                                                      gcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  2:1371938/1‑140 (MQ=255)                                                      gcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  1:500504/1‑140 (MQ=255)                                                      gcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  2:341538/1‑140 (MQ=255)                                                      gcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  2:973500/1‑140 (MQ=255)                                                      gcAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               >  1:1097950/1‑140 (MQ=255)                                                      cgaaggtttttCCAAAAAAAGTTTAGATTTTTTTTTTGTCGTTTAAT‑GCCTAAAAAACATGCATGACCAAAAAAAAAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTg                                                                                <  2:500504/133‑1 (MQ=255)                                                       gaaactttttTCAAAAAAGGTTTAAATTATTTTTTTGTCGTTAAAT‑CCCTTAAAAACATGCATGAGCCAAAAAATAATATAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGc                                                                               <  2:838066/134‑1 (MQ=255)                                                       cAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGcc                                                                              >  1:1568840/1‑140 (MQ=255)                                                              ttccaagaagaGT‑TTAGATGTTTTTTTTGTC‑TTTAATGGCCTGAAAAACATGCATGAGCCAAAAAATAAAAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAAtt                                                                       <  2:1559425/135‑1 (MQ=255)                                                                tcaaaaaCAGG‑TTAGATTATTTTTTTGTCTCTAAAT‑CCTTAAAAAACATGCATGACCCAAAAAATAATAAAAAAACC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATtcg                                                                     <  2:103311/135‑1 (MQ=255)                                                                     aaCAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGt                                                                >  1:1559425/1‑140 (MQ=255)                                                                       cAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTaa                                                              >  2:224205/1‑140 (MQ=255)                                                                          g‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCa                                                           >  1:1034740/1‑140 (MQ=255)                                                                          g‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCa                                                           >  2:135339/1‑140 (MQ=255)                                                                          g‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCa                                                           >  2:746003/1‑140 (MQ=255)                                                                          g‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCa                                                           >  1:1999056/1‑140 (MQ=255)                                                                              aGATGTTTTTTTTGTCGCTTAAT‑GCCTATAAAACTTGAATGAACCAAAAAATAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAt                                                        <  1:1119730/140‑1 (MQ=255)                                                                                attttttttttGTCGTTTAAT‑GCCTAAAAAACATGCATGAGCCAAAAAATAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGAttt                                                      <  2:47468/134‑1 (MQ=255)                                                                                  gttttttttGTCGTTTAAG‑GCTTAAAAAACAGCCAGGGCCAACAAAATAATATAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGc                                                    <  2:137983/136‑1 (MQ=255)                                                                                   ttttttttGTCGTTTAAT‑GCCTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCa                                                   <  1:161290/137‑1 (MQ=255)                                                                                    tttttttGTCTTTTAAT‑GCCTGAAAAACATGCATGACCCAAAAAATAATAAAAAAACC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCAt                                                  <  2:895662/138‑1 (MQ=255)                                                                                     cTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCAtt                                                 >  1:159553/1‑140 (MQ=255)                                                                                          tGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAttt                                            >  2:1296339/1‑140 (MQ=255)                                                                                          tGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAtt                                             >  2:1438757/1‑139 (MQ=255)                                                                                          tGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCAAAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGAtt                                             <  1:1438757/139‑1 (MQ=255)                                                                                           ttCGTTTAAT‑GCCTGAAAAACATGAATGAGCCAAAAAAAAAAAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTa                                           <  2:1311574/139‑1 (MQ=255)                                                                                            tCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTAc                                          >  1:1666448/1‑140 (MQ=255)                                                                                              gCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACgc                                        >  1:137983/1‑139 (MQ=255)                                                                                              gCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGt                                        >  1:1484330/1‑140 (MQ=255)                                                                                               cTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtc                                       >  1:2007650/1‑140 (MQ=255)                                                                                                ttAAT‑GCCTGAAAAACATGCATGAGCCAAAAAATAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGtca                                      <  2:1999056/140‑1 (MQ=255)                                                                                                taaaT‑CCCTGAAAAACATGAATGACCAAAAAAATAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACAtca                                      <  2:1070620/138‑1 (MQ=255)                                                                                                     tccctaaaaaaCATGCACGAGCAAAAAAATAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTcatcat                                  <  2:1816824/133‑1 (MQ=255)                                                                                                      ccctaaaaaaCATGCACGACCAAAAAAAAAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCAtt                                 <  2:1108325/134‑1 (MQ=255)                                                                                                      cccTGAAAAACATGAATGAGCCAAAAAATAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCAtt                                 <  2:159553/139‑1 (MQ=255)                                                                                                         tgaaaaaCATGCATGAGCCAAAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgtg                              <  1:1984130/137‑1 (MQ=255)                                                                                                         tGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgtg                              >  1:1108325/1‑140 (MQ=255)                                                                                                         tGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATtgtg                              >  2:1795284/1‑140 (MQ=255)                                                                                                           tAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGaa                            >  1:1816824/1‑140 (MQ=255)                                                                                                           tAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGaa                            >  1:1220095/1‑140 (MQ=255)                                                                                                           tAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGaa                            >  2:575613/1‑140 (MQ=255)                                                                                                                 atgcatgACCCAAAAAAAAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAata                      <  2:964974/140‑1 (MQ=255)                                                                                                                 atgagagAGCCAAAAAAAAATAAAAAAACC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAata                      <  2:263789/134‑1 (MQ=255)                                                                                                                 atgaatgaGCCAAAAAATAAAAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAata                      <  2:1770999/140‑1 (MQ=255)                                                                                                                 atgaatgaGCCAAAAAATAAAAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAata                      <  2:137916/140‑1 (MQ=255)                                                                                                                  tgcatgAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAatat                     >  2:1118331/1‑140 (MQ=255)                                                                                                                   gcatgAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATg                    >  1:572480/1‑140 (MQ=255)                                                                                                                   gcatgAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATg                    >  2:2041397/1‑140 (MQ=255)                                                                                                                    catgAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGc                   >  1:827400/1‑140 (MQ=255)                                                                                                                     atgACCCAAAAAATAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCa                  <  1:658594/140‑1 (MQ=255)                                                                                                                        aGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATg                    <  1:491353/135‑1 (MQ=255)                                                                                                                        aGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATg                    >  2:491353/1‑135 (MQ=255)                                                                                                                        aGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAAt               >  1:964974/1‑140 (MQ=255)                                                                                                                        aGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAAt               >  2:801690/1‑140 (MQ=255)                                                                                                                          caaaaaaaaaATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaa             <  2:1890417/136‑1 (MQ=255)                                                                                                                           aaaaaaaTAATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATaaa            <  2:1666448/137‑1 (MQ=255)                                                                                                                             caAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagt          >  1:1040291/1‑140 (MQ=255)                                                                                                                             caAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagt          >  1:541076/1‑140 (MQ=255)                                                                                                                             caAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagt          >  1:313916/1‑140 (MQ=255)                                                                                                                              aaaaaaATATAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  2:734032/140‑1 (MQ=255)                                                                                                                              aaaaaaATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  2:1040291/140‑1 (MQ=255)                                                                                                                              aaaaaaATAAAAAAAAC‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  2:541076/140‑1 (MQ=255)                                                                                                                              aaaaTAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  1:801690/140‑1 (MQ=255)                                                                                                                              aaaaTAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  1:746003/140‑1 (MQ=255)                                                                                                                              aaaaTAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  1:1296339/140‑1 (MQ=255)                                                                                                                              aaaaTAATAAAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtg         <  2:1034740/140‑1 (MQ=255)                                                                                                                                aataatATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgag       >  2:311304/1‑140 (MQ=255)                                                                                                                                   aataTAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAgtgagtga    <  1:135339/140‑1 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgag       <  1:581389/135‑1 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAagtgag       >  2:581389/1‑135 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  >  1:275401/1‑140 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  <  1:1371938/140‑1 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  >  2:812688/1‑140 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  <  1:224205/140‑1 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  <  1:973500/140‑1 (MQ=255)                                                                                                                                     tataAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  >  2:2022834/1‑140 (MQ=255)                                                                                                                                       taAAAAATCGCCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAat  <  2:2010492/140‑1 (MQ=255)                                                                                                                                       |                                                                                                                                            CATTTGGTCCACTTTTTTCTGCTCGTTTTTATTTCATGCAATCTTCTTGCTGCGCAAGCGTTTTCCAGAACAGG‑TTAGATGATCTTTTTGTCGCTTAAT‑GCCTGTAAAACATGCATGAGCCACAAAATAATATAAAAAAT‑‑CCCGCCATTAAGTTGACTTTTAGCGCCCATATCTCCAGAATGCCGCCGTTTGCCAGAAATTCGTCGGTAAGCAGATTTGCATTGATTTACGTCATCATTGTGAATTAATATGCAAATAAAGTGAGTGAAT  >  NC_000913/29364‑29633

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑