| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,001,918 | 0 | A | C | 43.5% | 76.7 / 46.2 | 69 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| Reads supporting (aligned to +/- strand): ref base A (39/0); new base C (0/30); total (39/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.16e-20 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAG > NC_000913/2001783‑2002051 | aaTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAAcccc > 2:397471/1‑140 (MQ=255)aaTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAAcccc > 2:196115/1‑140 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCccg > 1:996760/1‑140 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCccg > 2:989679/1‑140 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCccg > 2:1543582/1‑140 (MQ=255) aTTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCccg > 1:432596/1‑140 (MQ=255) tCACGATAAACAGCCCTGGGTTATATGAGTTATCGGCATGTTTATCCGTTTCGGCAGGGTTTTTAAGCGGACGATTAGGGGGTGAAATGGGGGGTTATTGGGGGG‑TTACAGGTAAATTCCAGGAAA‑AAAAAACCCccgcc < 2:1462429/140‑1 (MQ=255) cGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGt > 1:1549834/1‑140 (MQ=255) aCAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCggg > 2:1134509/1‑140 (MQ=255) aCAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCggg > 1:1462429/1‑140 (MQ=255) gCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGaa > 1:12539/1‑140 (MQ=255) gCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGaa > 1:1456997/1‑140 (MQ=255) cGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGt > 1:264563/1‑140 (MQ=255) cGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGt > 1:537632/1‑140 (MQ=255) atatGAGTTATCGGAATGATTATCCTTTTCTGCAGGTTTTTTAATCGGACGATTGGTGGGTGAAATGGGGGGTTATTGGGGGT‑TTAAAGGTAAATCCCAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCt < 2:1514070/140‑1 (MQ=255) tatGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTg > 2:1056936/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 2:420870/1‑140 (MQ=255) gTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAATGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACaaa > 2:1126705/1‑140 (MQ=255) ttATGGGCATGATTACCCTTTTCTGCAGGTTTTTTAATCGGACGATTAGGGGGTGAAATGGGGGTTTATTTGGGGG‑TTACAGGAAAATCCCAGGAAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt < 2:1472969/140‑1 (MQ=255) ttATCGGCATGATTATCCTTTTCTGCGGGTTTTTTAATCGGACGATTAGTGGGTAAAATGAGGGGTTATTTGGGGG‑TTAAAGGTAAATCCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAt < 2:12539/140‑1 (MQ=255) tATCGGAATGTTTTTCGTTTTCTGCAGGTTTTTAAATCGGACGTTTGGGGGGTAAAATGGGGGTTTATTTGGGGG‑TTACAGTAAAATCCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAAtt < 2:1473896/140‑1 (MQ=255) aTCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTg > 1:2056426/1‑140 (MQ=255) cGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcg > 1:1051995/1‑140 (MQ=255) ggCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTgcct > 1:2060463/1‑138 (MQ=255) aTGATTATCTGTTTCTGCGGGTTTTTTAATCGGACAATTAGGGGGTAAAAGGGGGGTTTATTTGGGGG‑TTACAGGAAAATCCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt < 2:996760/140‑1 (MQ=255) aTGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCttt > 1:1063254/1‑140 (MQ=255) gATTATCCGTTTCTGCAGGTTTTTTAATCGGACGATTAGTGGGTAAAAGGAGGGTTTATTGGGGGG‑TTACAGGAAAATTCCAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAATTTGCGCTTTAt < 2:72557/140‑1 (MQ=255) ttCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAATTTGCGCTTTATGTTGCCGGAt > 1:72557/1‑140 (MQ=255) ttCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCCTTATGTTGCCGGAt > 1:1216639/1‑140 (MQ=255) gggttttttAATGGGACGATTGGGGGGT‑AAAAGGGGGGTTTTTTGGGGGTTTACAGGTAAATTCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATgcggcg < 1:1543582/136‑1 (MQ=255) gTTTTTAATCGGACGATTGGGGGGTGAAAGGGGGGGTTATTGGGGGG‑TTACAGGAAAATCCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaa < 2:537632/140‑1 (MQ=255) tttttAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTaaa > 1:1415157/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 1:92572/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 2:153655/1‑140 (MQ=255) gACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATcc > 2:1089613/1‑140 (MQ=255) aCGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCg < 1:1484852/140‑1 (MQ=255) aattggggggTGAAATGAGGGGTTATTTGGGGG‑TTACGGGTAAATTCCGGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGc < 1:196115/133‑1 (MQ=38) aGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAGAAAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa > 1:1188348/1‑140 (MQ=255) ggTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGC‑GGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACaaaaa > 1:1577653/1‑140 (MQ=255) aaTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAAtgtg > 1:564682/1‑140 (MQ=255) aTGGGGGTTTATTTGGGGG‑TTACAGGTAAATCCCAGGCAA‑AAAAACCCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 2:2056426/140‑1 (MQ=38) aTGGGGGTTTATTGGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 2:432596/140‑1 (MQ=255) aTGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 1:153655/140‑1 (MQ=255) gggTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAAtt > 1:594421/1‑140 (MQ=255) ggTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTc > 1:422456/1‑140 (MQ=255) tttgggggg‑TTACAGGTAAATTCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATa < 1:945501/136‑1 (MQ=255) ggggg‑TTACAGGTAAATTCCAGAAAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 1:636223/140‑1 (MQ=255) ggggg‑TTACAGGTAAATGCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:1456997/140‑1 (MQ=255) ggggg‑TTACAGGAAAATTCCAGGAAA‑AAAAACCCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAAtt < 2:594421/140‑1 (MQ=37) ggg‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGc > 1:77373/1‑140 (MQ=255) gg‑TTACAGGTAAATTCCAGGCAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc < 1:1353102/123‑1 (MQ=255) gg‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGc > 2:1353102/1‑123 (MQ=255) g‑TTACAGGTAAATCCCAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa < 2:1415157/140‑1 (MQ=255) g‑TTAAAGGAAAATCCCAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCaa < 2:264563/140‑1 (MQ=37) tACAGGTAAATTCCAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAAtt < 1:1126705/140‑1 (MQ=255) aaagatAAATCCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc < 2:1359832/135‑1 (MQ=37) aCAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc > 2:427899/1‑140 (MQ=255) aCAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTc > 2:691662/1‑140 (MQ=255) cAGGTAAATTCCAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 1:989679/140‑1 (MQ=255) aaGGAAATTTCAAGGAAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCa < 1:397471/139‑1 (MQ=37) aaaaTTCCAGGAAA‑AAAAAACCCCCGCCGGTGGC‑GGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:1577653/139‑1 (MQ=37) aaaTCCGAGGCAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:77373/140‑1 (MQ=255) aaaTCCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTg < 2:1549834/140‑1 (MQ=255) aaTTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 1:703437/1‑140 (MQ=255) aaTTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACATTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGt > 1:1296996/1‑140 (MQ=255) aTTCCAGGCAG‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTa < 1:427899/140‑1 (MQ=255) aTTCCAGGAAA‑AAAAAACCCCCGCCGGTGGCGGGGAAGCACATTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTa < 2:1296996/140‑1 (MQ=255) ggCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTg > 1:480311/1‑140 (MQ=255) aG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATa > 1:785314/1‑140 (MQ=255) aaaaaaaCCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAag > 2:864610/1‑140 (MQ=255) | AATTCACGATAAACAGCCCTGCGTTATATGAGTTATCGGCATGATTATCCGTTTCTGCAGGGTTTTTAATCGGACGATTAGTGGGTGAAATGAGGGGTTATTTGGGGG‑TTACAGGTAAATTCCAGGCAG‑AAAAAAACCCCGCCGGTGGCGGGGAAGCACGTTGCTGACAAATTGCGCTTTATGTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACAAAAATGTGCAAATTCAATAAATTGCAATTCAACTTGTAGGCCTGATAAG > NC_000913/2001783‑2002051 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |