Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,941,512	C→A	intergenic (‑185/‑296)	yieP ← / → rrsC	putative transcriptional regulator YieP/16S ribosomal RNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,941,512	0	C	A	100.0%	264.9 / NA	85	intergenic (‑185/‑296)	yieP/rrsC	putative transcriptional regulator YieP/16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (51/34);  total (51/34)

TGTGATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAA  >  NC_000913/3941378‑3941648                                                                                                                                       |                                                                                                                                         tgtgATTACGGTTGCAAAAACGACAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCaaccac                                                                                                                                     >  2:1062912/1‑140 (MQ=255)   tgATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTg                                                                                                                                   >  1:739067/1‑140 (MQ=255)   tgATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTg                                                                                                                                   >  2:1238478/1‑140 (MQ=255)   tgATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTg                                                                                                                                   >  2:1945933/1‑140 (MQ=255)   tgATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTg                                                                                                                                   >  2:1738320/1‑140 (MQ=255)    gATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGa                                                                                                                                  <  2:996001/140‑1 (MQ=255)    gATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGa                                                                                                                                  >  1:567534/1‑140 (MQ=255)    gATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGa                                                                                                                                  <  2:1495767/140‑1 (MQ=255)         cGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACgg                                                                                                                             >  2:341401/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  2:266131/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  2:573353/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  1:93331/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  1:839502/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  1:821107/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  2:740788/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  2:1269774/1‑140 (MQ=255)           gTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaa                                                                                                                           >  1:1975104/1‑140 (MQ=255)               cAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGaca                                                                                                                                <  1:177341/131‑1 (MQ=255)               cAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGaca                                                                                                                                >  2:177341/1‑131 (MQ=255)               cAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaacaac                                                                                                                       >  1:1001927/1‑140 (MQ=255)               cAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaacaac                                                                                                                       >  2:360875/1‑140 (MQ=255)               cAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGaacaac                                                                                                                       >  1:721391/1‑140 (MQ=255)                  aaaCGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGc                                                                                                                    <  2:1420945/140‑1 (MQ=255)                      ggCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAac                                                                                                                <  1:2047753/140‑1 (MQ=255)                       gCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAaca                                                                                                               <  2:93331/140‑1 (MQ=255)                       gCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAaca                                                                                                               <  1:471910/140‑1 (MQ=255)                          aaTTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCTAACAcgc                                                                                                            >  1:539600/1‑140 (MQ=255)                                ttGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCgg                                                                                                      <  1:1357106/140‑1 (MQ=255)                                  gTTTTATGGCACATTAACGGGGCTTTTGCTGAAAGAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGt                                                                                                    >  2:1935250/1‑140 (MQ=255)                                  gTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGt                                                                                                    <  1:1945933/140‑1 (MQ=255)                                     ttATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAg                                                                                                 <  1:1062912/140‑1 (MQ=255)                                     ttACGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAg                                                                                                 <  1:1413466/140‑1 (MQ=255)                                       aTGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCg                                                                                               <  1:1826371/140‑1 (MQ=255)                                         ggCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCTGGGTCAGCggg                                                                                             >  2:1809608/1‑140 (MQ=255)                                         ggCACATTAACGGGGCTTTTGCTG‑AAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgggg                                                                                            >  2:1290883/1‑140 (MQ=255)                                          gCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgggg                                                                                            <  2:791443/140‑1 (MQ=255)                                            cacatAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGtt                                                                                          <  1:1604119/136‑1 (MQ=255)                                            acaTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGtt                                                                                          <  2:739067/140‑1 (MQ=255)                                            acaTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGtt                                                                                          <  1:1321999/140‑1 (MQ=255)                                             caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCg                                                                                               >  2:1878157/1‑134 (MQ=255)                                             caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCg                                                                                               <  1:1878157/134‑1 (MQ=255)                                             caTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTtc                                                                                         >  2:1702355/1‑140 (MQ=255)                                              aTTAACGGGGCTTTTGCTGAAAGAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTtct                                                                                        <  1:1935250/140‑1 (MQ=255)                                              aTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTtct                                                                                        >  2:1399756/1‑140 (MQ=255)                                                 aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCt                                                                                     <  2:821107/140‑1 (MQ=255)                                                 aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCt                                                                                     <  2:839502/140‑1 (MQ=255)                                                  aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgggg                                                                                            >  2:532096/1‑132 (MQ=255)                                                  aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgggg                                                                                            <  1:532096/132‑1 (MQ=255)                                                      ggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGaa                                                                                <  2:1975104/140‑1 (MQ=255)                                                      ggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGaa                                                                                >  2:1802273/1‑140 (MQ=255)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCGGCGGGGTTCTCCTGAGaatc                                                                              >  2:935571/1‑138 (MQ=255)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgggg                                                                                            <  2:1181310/126‑1 (MQ=38)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCgggg                                                                                            >  1:1181310/1‑126 (MQ=38)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGaa                                                                                <  1:816532/138‑1 (MQ=37)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGaa                                                                                >  2:816532/1‑138 (MQ=37)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACt                                                                              >  1:1256183/1‑140 (MQ=37)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCCGGTCAGCgggg                                                                                            <  2:1712249/126‑1 (MQ=255)                                                        cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCCGGTCAGCgggg                                                                                            >  1:1712249/1‑126 (MQ=255)                                                          tttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTcc                                                                            >  1:972320/1‑140 (MQ=25)                                                            tGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCgg                                                                          >  1:1125725/1‑140 (MQ=18)                                                                                                          tCAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGta                            <  1:69902/140‑1 (MQ=18)                                                                                                           cAGGCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtat                           <  1:1399756/140‑1 (MQ=18)                                                                                                              gCCGGAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGtattat                        >  2:1972395/1‑140 (MQ=17)                                                                                                                 ggAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                     <  2:972320/140‑1 (MQ=18)                                                                                                                 ggAATAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGca                     <  1:1269774/140‑1 (MQ=18)                                                                                                                   aaTAACTCCCTATAATGTGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcaca                   >  2:293981/1‑140 (MQ=12)                                                                                                                   aaTAACTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGcaca                   >  2:1169830/1‑140 (MQ=17)                                                                                                                        cTCCCTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCcg              <  2:2003959/140‑1 (MQ=17)                                                                                                                           ccTATAATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCgcgc           <  2:690312/140‑1 (MQ=17)                                                                                                                             tataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccg         >  2:1837065/1‑140 (MQ=17)                                                                                                                             tataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccg         >  2:391517/1‑140 (MQ=17)                                                                                                                             tataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccg         >  1:748244/1‑140 (MQ=17)                                                                                                                             tataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccg         >  2:2067345/1‑140 (MQ=17)                                                                                                                             tataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccg         >  1:1229751/1‑140 (MQ=17)                                                                                                                              ataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccgc        <  1:573353/140‑1 (MQ=17)                                                                                                                              ataATGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGcgccgc        <  2:721391/140‑1 (MQ=17)                                                                                                                                aaTGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTg      <  1:1972395/140‑1 (MQ=17)                                                                                                                                  tGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag    >  1:1410183/1‑140 (MQ=17)                                                                                                                                  tGCGCAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgag    >  2:1609067/1‑140 (MQ=17)                                                                                                                                   gcgcAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga   >  1:1224467/1‑140 (MQ=17)                                                                                                                                   gcgcAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga   >  2:2052844/1‑140 (MQ=17)                                                                                                                                   gcgcAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga   >  2:440128/1‑140 (MQ=17)                                                                                                                                   gcgcAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga   >  2:1510960/1‑140 (MQ=17)                                                                                                                                   gcgcAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGAGGGAAAGCGTATTATGCACACCCCGCGCCGCTgaga   >  1:106357/1‑140 (MQ=17)                                                                                                                                   gcgcAACCACTGACACGGAACAA‑GGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGaa  >  2:930353/1‑140 (MQ=12)                                                                                                                                    cgcAACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGaa  >  1:945196/1‑140 (MQ=17)                                                                                                                                       |                                                                                                                                         TGTGATTACGGTTGCAAAAACGGCAAATTGCTTGTTTTATGGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCGTATTATGCACACCCCGCGCCGCTGAGAA  >  NC_000913/3941378‑3941648

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑