| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,797,320 | C→A | P37H (CCC→CAC) | ygaV → | putative DNA‑binding transcriptional regulator YgaV |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,797,320 | 0 | C | A | 95.7% | 149.8 / 0.7 | 46 | P37H (CCC→CAC) | ygaV | putative DNA‑binding transcriptional regulator YgaV |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base A (25/19); total (26/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 | |||||||||||
ACTTAAATAAATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCCCGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCATTCTATATTCCATTAA > NC_000913/2797199‑2797455 | aCTTAAATAAATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGgaga > 1:447265/1‑140 (MQ=255) aataTGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGAcgcg < 1:108051/140‑1 (MQ=255) aataTGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGAcgcg < 2:162067/140‑1 (MQ=255) aataTGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGAcgcg < 1:118041/140‑1 (MQ=255) tatGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCa > 1:380280/1‑140 (MQ=255) aCTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTAc > 2:151488/1‑140 (MQ=255) cTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTAcc > 2:446956/1‑140 (MQ=255) cTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTAcc > 2:425993/1‑140 (MQ=255) cTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTAcc > 2:43384/1‑140 (MQ=255) aaCTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCgg < 2:158850/139‑1 (MQ=255) aaCTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCgg > 1:158850/1‑139 (MQ=255) aaCTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGa > 2:56851/1‑140 (MQ=255) aaCTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGa > 1:191472/1‑140 (MQ=255) cTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACt > 2:158383/1‑140 (MQ=255) gcgcAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAg > 2:403449/1‑140 (MQ=255) ggCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGa < 1:293367/140‑1 (MQ=255) tGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATcac > 1:31055/1‑140 (MQ=255) tGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATcac > 1:355264/1‑140 (MQ=255) tGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATcac > 1:388831/1‑140 (MQ=255) tGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATcac > 1:113222/1‑140 (MQ=255) aaCAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCAt > 2:207486/1‑140 (MQ=255) ggCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATctcg < 2:61492/140‑1 (MQ=255) aGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATctcgctc > 2:406152/1‑140 (MQ=255) tATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCgg > 2:228600/1‑140 (MQ=255) tATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTT‑CCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTACGACATCACAGCATCTCGCTCGTATGCggg > 2:437848/1‑140 (MQ=255) aTTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCggg < 1:406152/140‑1 (MQ=255) aaaGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGa < 1:151488/140‑1 (MQ=255) aaaGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGa > 1:106034/1‑140 (MQ=255) aGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTAt > 1:14885/1‑140 (MQ=255) cACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGa < 1:446956/140‑1 (MQ=255) aTTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACggg < 1:403449/140‑1 (MQ=255) aTTGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACggg < 2:31055/140‑1 (MQ=255) tGCTGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGAt > 2:82705/1‑140 (MQ=255) tGCTGATTCTGTGCATGCTTAGCGGCTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGAt > 1:307694/1‑140 (MQ=255) tGATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGcc < 1:81764/140‑1 (MQ=255) gATTCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGccc > 1:396572/1‑140 (MQ=255) tCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAAc < 1:425993/140‑1 (MQ=255) tCTGTGCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAAc < 2:447265/140‑1 (MQ=255) gtgCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCa < 2:191472/140‑1 (MQ=255) gtgCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCa < 1:82705/140‑1 (MQ=255) gtgCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCa < 1:56851/140‑1 (MQ=255) gtgCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCa < 1:325203/140‑1 (MQ=255) gCATGCTTAGCGGTTCCCACGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCAtt < 2:372768/140‑1 (MQ=255) tCCCCCGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCa > 2:365939/1‑124 (MQ=255) tCCCCCGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCa < 1:365939/124‑1 (MQ=255) tCCCACGGCACCAGCGCGGGAGAGCTGACGCGAATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCATTCTATATTCCATTaa > 1:423496/1‑140 (MQ=255) | ACTTAAATAAATATGACTGAACTCGCGCAATTACAGGCCAGTGCCGAACAGGCAGCGGCCTTATTGAAAGCAATGAGCCACCCTAAACGATTGCTGATTCTGTGCATGCTTAGCGGTTCCCCCGGCACCAGCGCGGGAGAGCTGACGCGCATTACCGGACTGAGTGCCTCTGCGACATCACAGCATCTCGCTCGTATGCGGGACGAAGGGCTTATCGACAGCCAACGGGATGCCCAACGCATTCTATATTCCATTAA > NC_000913/2797199‑2797455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |