mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,604,344 | 0 | C | T | 60.0% | ‑4.4 / 48.5 | 45 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 4,111,747 | 0 | G | T | 35.5% | 53.2 / 18.4 | 31 | N156K (AAC→AAA) | yiiQ | DUF1454 domain‑containing protein YiiQ |
| * | NC_000913 | 2,326,450 | 0 | T | G | 35.1% | 59.2 / 18.8 | 37 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 29,496 | 0 | T | A | 34.6% | 40.6 / 11.0 | 26 | intergenic (+301/‑155) | dapB/carA | 4‑hydroxy‑tetrahydrodipicolinate reductase/carbamoyl phosphate synthetase subunit alpha |
| * | NC_000913 | 1,068,173 | 0 | T | G | 34.2% | 64.8 / 16.9 | 41 | G31G (GGT→GGG) | ymdF | conserved protein YmdF |
| * | NC_000913 | 3,206,435 | 0 | C | T | 32.5% | 54.0 / 23.0 | 40 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_000913 | 4,101,514 | 0 | G | T | 32.1% | 47.2 / 15.5 | 28 | intergenic (+84/‑176) | sodA/kdgT | superoxide dismutase (Mn)/2‑dehydro‑3‑deoxy‑D‑gluconate:H(+) symporter |
| * | NC_000913 | 650,809 | 0 | T | G | 31.4% | 58.8 / 12.4 | 35 | T350P (ACC→CCC) | citC | citrate lyase synthetase |
| * | NC_000913 | 2,001,918 | 0 | A | C | 27.1% | 106.6 / 15.4 | 48 | intergenic (‑129/+192) | fliA/fliC | RNA polymerase, sigma 28 (sigma F) factor/flagellar filament structural protein |
| * | NC_000913 | 646,747 | 0 | T | G | 25.8% | 63.7 / 12.0 | 31 | T255P (ACC→CCC) | citG | triphosphoribosyl‑dephospho‑CoA synthase |
| * | NC_000913 | 2,782,509 | 0 | A | C | 23.2% | 135.5 / 10.4 | 56 | V73G (GTA→GGA) | ypjA | adhesin‑like autotransporter YpjA |
| * | NC_000913 | 4,296,060 | 0 | C | T | 23.1% | 71.9 / 18.9 | 39 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 2057183 | 39 (0.860) | 7 (0.150) | 5/278 | 4.0 | 15.2% | coding (326/717 nt) | yeeN | putative transcriptional regulator YeeN |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 340006 | NA (NA) | 3 (0.080) +29 bp |
3/218 | 4.1 | NA | noncoding (18/29 nt) | other | REPv23f |
| ? | NC_000913 | = 377529 | NA (NA) | intergenic (+218/+6) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 339913 | NA (NA) | 3 (0.080) +29 bp |
3/218 | 4.1 | NA | noncoding (18/29 nt) | other | REPv23d |
| ? | NC_000913 | = 377529 | NA (NA) | intergenic (+218/+6) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 339820 | NA (NA) | 3 (0.080) +29 bp |
3/218 | 4.1 | NA | noncoding (18/29 nt) | other | REPv23b |
| ? | NC_000913 | = 377529 | NA (NA) | intergenic (+218/+6) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | 268945 = | 33 (0.730) | 3 (0.070) | 3/264 | 4.7 | 8.3% | coding (16/864 nt) | ykfA | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| ? | NC_000913 | 269052 = | 35 (0.810) | intergenic (‑92/+237) | ykfA/perR | CP4‑6 prophage; putative GTP‑binding protein YkfA/putative transcriptional regulator PerR | |||||
| * | ? | NC_000913 | = 2057183 | 39 (0.860) | 4 (0.090) | 3/278 | 4.9 | 9.3% | coding (326/717 nt) | yeeN | putative transcriptional regulator YeeN |
| ? | NC_000913 | = 2067353 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||