New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 555833	35 (1.040)	9 (0.300)	7/244	2.0	20.7%	coding (1223/1386 nt)	cysS	cysteine‑‑tRNA ligase
	?	NC_000913	= 556784	38 (1.280)					coding (90/213 nt)	ybcJ	putative RNA‑binding protein YbcJ

GGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGC  >  NC_000913/555696‑555970                                                                                                                                          |                                                                                                                                          ggCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCgcaggcag                                                                                                                                         >  2:451551/1‑140 (MQ=255)       tGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACa                                                                                                                                   >  2:314000/1‑140 (MQ=255)                   tCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTg                                                                                                                       >  1:444654/1‑140 (MQ=255)                     tGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggc                                                                                                                     >  2:458098‑M1/1‑118 (MQ=255)                        aaGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAg                                                                                                                             >  1:10514/1‑129 (MQ=255)                        aaGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAg                                                                                                                             <  2:10514/129‑1 (MQ=255)                             gaagaTATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGc                                                                                                             <  2:391757/140‑1 (MQ=255)                              aagaTATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCg                                                                                                            >  1:122140/1‑140 (MQ=255)                                       cAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCaa                                                                                                   <  1:143555/140‑1 (MQ=255)                                       cAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCaa                                                                                                   <  1:314000/140‑1 (MQ=255)                                                aTGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTg                                                                                          <  2:444654/140‑1 (MQ=255)                                                            ctcACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTaaa                                                                              >  1:516242/1‑140 (MQ=255)                                                             tcACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGG‑TGCCCGTAAAGc                                                                            >  1:496121/1‑140 (MQ=255)                                                                  tGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGaaa                                                                        >  1:146449/1‑140 (MQ=255)                                                                    cGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGa                                                                      >  2:170978/1‑140 (MQ=255)                                                                             tCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGggcggc                                                             <  2:120490/140‑1 (MQ=255)                                                                                    atccgggcctgCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagaca                                                      >  2:123472‑M1/5‑55 (MQ=255)                                                                                     aTTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATg                                                     >  2:192733/1‑140 (MQ=255)                                                                                      ttGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGG‑TGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATgcg                                                   <  2:496121/140‑1 (MQ=255)                                                                                            ctgctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttt                                              >  2:11808‑M1/1‑47 (MQ=255)                                                                                              gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttg                                            <  1:458098‑M1/140‑96 (MQ=255)                                                                                              gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttg                                            >  1:293767‑M1/1‑45 (MQ=255)                                                                                              gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTg                                            >  2:553355/1‑140 (MQ=255)                                                                                              gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTg                                            >  2:95537/1‑140 (MQ=255)                                                                                              gctgGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTg                                            <  1:192733/140‑1 (MQ=255)                                                                                                  gAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcagg                                        >  2:57242‑M1/1‑41 (MQ=255)                                                                                                     cAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCt                                     >  1:177397/1‑140 (MQ=255)                                                                                                        gAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTaa                                  <  2:516242/140‑1 (MQ=255)                                                                                                         aaCCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAAc                                 <  1:91250/140‑1 (MQ=255)                                                                                                         aaCCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAAc                                 <  2:122140/140‑1 (MQ=255)                                                                                                            atccggcgttcCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgta                              >  1:228418‑M1/6‑31 (MQ=255)                                                                                                             ggAAGCGTTCCTGCAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtac                             >  2:180716‑M1/1‑30 (MQ=255)                                                                                                                    ttCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGAt                      <  2:177397/140‑1 (MQ=255)                                                                                                                          cAAAGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctg                <  1:11808‑M1/140‑124 (MQ=255)                                                                                                                           aaaGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctga               >  2:174724‑M1/1‑16 (MQ=255)                                                                                                                            aaGCGGTGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTgg              >  1:92432/1‑140 (MQ=255)                                                                                                                            aaGCGGCGCGCAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgat              >  1:122788‑M1/1‑15 (MQ=255)                                                                                                                             aGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCTCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGa             >  2:191069/1‑140 (MQ=255)                                                                                                                               cggcgCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAg           >  1:366186/1‑140 (MQ=255)                                                                                                                                  cgcgcAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATg        >  1:479891/1‑140 (MQ=255)                                                                                                                                   gcgcAGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttc       >  2:573068‑M1/1‑8 (MQ=255)                                                                                                                                   gcgcAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATgg       <  2:92432/140‑1 (MQ=255)                                                                                                                                     gcaggcagACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGcc     <  1:447638/140‑1 (MQ=255)                                                                                                                                     gcaggcagACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGcc     <  1:505891/140‑1 (MQ=255)                                                                                                                                       aggcagACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCg   <  1:95537/140‑1 (MQ=255)                                                                                                                                       aggcagACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCg   <  2:366186/140‑1 (MQ=255)                                                                                                                                       aggcagACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCg   <  1:553355/140‑1 (MQ=255)                                                                                                                                       aGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccgg   <  1:180716‑M1/140‑137 (MQ=255)                                                                                                                                       aGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccgg   <  1:123472‑M1/140‑137 (MQ=255)                                                                                                                                       aGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccgg   <  2:293767‑M1/140‑137 (MQ=255)                                                                                                                                       aGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccgg   <  2:228418‑M1/140‑137 (MQ=255)                                                                                                                                       aGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccgg   <  2:152263‑M1/140‑137 (MQ=255)                                                                                                                                       aGGCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccgg   <  1:57242‑M1/140‑137 (MQ=255)                                                                                                                                        ggCgaaaatcgcgattgccgaaggccaggtgaaagtcgacggtgcggttgaaacgcgcaaacgctgcaaaatcgtcgccggtcagacagtgagttttgcaggtcacagcgtacaggttgttgcctgatccctttcccggc  <  2:312285‑M1/140‑138 (MQ=255)                                                                                                                                          |                                                                                                                                          GGCGCGTGAAGTAAACCGTCTGAAAGCAGAAGATATGGCAGCGGCGAATGCAATGGCATCTCACCTGCGTAAACTTTCCGCTGTATTGGGCCTGCTGGAGCAAGAACCGGAAGCGTTCCTGCAAAGCGGCGCGCAGGCAGACGACAGCGAAGTGGCTGAGATTGAAGCGTTAATTCAACAGCGTCTGGATGCCCGTAAAGCGAAAGACTGGGCGGCGGCGGATGCGGCGCGTGATCGTCTTAACGAGATGGGGATCGTGCTGGAAGATGGCCCGC  >  NC_000913/555696‑555970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.