BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,280,018	Δ1 bp	coding (466/696 nt)	rsuA ←	16S rRNA pseudouridine(516) synthase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,280,017	0	T	.	100.0%	393.4 / NA	93	coding (467/696 nt)	rsuA	16S rRNA pseudouridine(516) synthase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (45/48); total (45/48)

Only 100 of 104 total aligned reads displayed.

ACGATGCAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGTTATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACCATCATCAGTCA  >  NC_000913/2279878‑2280152

aCGATGCAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGt                                                                                                                                         >  2:216147/1‑140 (MQ=255)

aCGATGCAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGt                                                                                                                                         >  1:1319534/1‑140 (MQ=255)

 cGATGCAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGta                                                                                                                                        <  1:1027872/140‑2 (MQ=255)

    tGCAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGtatgc                                                                                                                                     <  1:1573674/140‑5 (MQ=255)

      cAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAg                                                                                                                                  >  1:42593/1‑140 (MQ=255)

      cAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCAATTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAg                                                                                                                                  >  1:339520/1‑140 (MQ=255)

       aGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGc                                                                                                                                 >  1:1072310/1‑140 (MQ=255)

       aGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGc                                                                                                                                 >  2:616913/1‑140 (MQ=255)

                 cGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGta                                                                                                                                        >  1:609868/1‑123 (MQ=255)

                 cGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGta                                                                                                                                        <  2:609868/124‑2 (MQ=255)

                   tGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGtat                                                                                                                                       <  1:739667/123‑3 (MQ=255)

                   tGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGtat                                                                                                                                       >  2:739667/1‑121 (MQ=255)

                   tGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCa                                                                                                                                   >  1:150766/1‑126 (MQ=255)

                   tGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCa                                                                                                                                   <  2:150766/126‑1 (MQ=255)

                   tGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTa                                                                                                                     >  2:111826/1‑140 (MQ=255)

                        aCCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCaaa                                                                                                                >  1:1054896/1‑140 (MQ=255)

                        aCCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCaaa                                                                                                                >  1:1081972/1‑140 (MQ=255)

                        aCCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCaaa                                                                                                                >  2:168482/1‑140 (MQ=255)

                        aCCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCaaa                                                                                                                >  2:1505749/1‑140 (MQ=255)

                           cACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTg                                                                                                             <  2:724172/140‑1 (MQ=255)

                            aCGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGc                                                                                                            >  2:704713/1‑140 (MQ=255)

                             cggcggCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGct                                                                                                           <  1:446013/140‑1 (MQ=255)

                             cggcggCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGct                                                                                                           <  2:42593/140‑1 (MQ=255)

                               gcggcgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGctct                                                                                                         <  1:616913/140‑1 (MQ=255)

                               gcggcgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGctct                                                                                                         >  2:728875/1‑140 (MQ=255)

                                cggcgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCGAATTGCTCTg                                                                                                        >  2:1384721/1‑140 (MQ=255)

                                cggcgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTg                                                                                                        >  1:837806/1‑140 (MQ=255)

                                cggcgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTg                                                                                                        >  1:1196197/1‑140 (MQ=255)

                                  gcgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGcc                                                                                                      <  2:1523153/140‑1 (MQ=255)

                                   cgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCg                                                                                                     >  1:335557/1‑140 (MQ=255)

                                   cgAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCg                                                                                                     >  1:865540/1‑140 (MQ=255)

                                     aaCATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTa                                                                                                   <  2:1300948/140‑1 (MQ=255)

                                     aaCATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCATa                                                                                                   <  2:187926/140‑1 (MQ=255)

                                        aTGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCg                                                                                                <  2:830322/140‑1 (MQ=255)

                                        aTGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCAATTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCg                                                                                                <  2:339520/140‑1 (MQ=255)

                                         tGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGt                                                                                               <  2:1462424/140‑1 (MQ=255)

                                         tGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGt                                                                                               <  2:933403/140‑1 (MQ=255)

                                          gCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTc                                                                                              <  1:1505749/140‑1 (MQ=255)

                                          gCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTc                                                                                              <  1:728875/140‑1 (MQ=255)

                                               tCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGt                                                                                               >  1:616561/1‑134 (MQ=255)

                                               tCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGt                                                                                               <  2:616561/134‑1 (MQ=255)

                                               tCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTa                                                                                         <  1:201496/140‑1 (MQ=255)

                                                 aCCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACa                                                                                       <  2:1209086/140‑1 (MQ=255)

                                                   cTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAgg                                                                                     <  2:335557/140‑1 (MQ=255)

                                                     gatgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTg                                                                                   >  2:578506/1‑140 (MQ=255)

                                                     gatgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTg                                                                                   >  1:771225/1‑140 (MQ=255)

                                                      atgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGt                                                                                               <  1:1085984/127‑1 (MQ=255)

                                                      atgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGt                                                                                               >  2:1085984/1‑127 (MQ=255)

                                                      atgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTc                                                                                              >  1:637179/1‑128 (MQ=255)

                                                      atgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTc                                                                                              <  2:637179/128‑1 (MQ=255)

                                                      atgatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGa                                                                                  >  2:845105/1‑140 (MQ=255)

                                                        gatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGAtt                                                                                <  1:216147/140‑1 (MQ=255)

                                                        gatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGAtt                                                                                >  2:1255582/1‑140 (MQ=255)

                                                        gatAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAACACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGAtt                                                                                >  2:852805/1‑140 (MQ=255)

                                                          tAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTcc                                                                              >  1:245291/1‑140 (MQ=255)

                                                           aaCGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCa                                                                             <  2:1081972/140‑1 (MQ=255)

                                                            aCGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAg                                                                            <  1:362272/140‑1 (MQ=255)

                                                             cGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAgt                                                                           >  2:118886/1‑140 (MQ=255)

                                                             cGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAgt                                                                           >  1:153219/1‑140 (MQ=255)

                                                             cGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAgt                                                                           <  1:845105/140‑1 (MQ=255)

                                                                 cTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAgt                                                                           <  1:379006/136‑1 (MQ=255)

                                                                 cTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAgt                                                                           >  2:379006/1‑136 (MQ=255)

                                                                 cTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCa                                                                       <  1:118886/140‑1 (MQ=255)

                                                                  ttCGCTGATGGTCAGACGAAGCTGAGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCAc                                                                      >  1:1420573/1‑140 (MQ=255)

                                                                  ttCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCAc                                                                      <  1:1255582/140‑1 (MQ=255)

                                                                   tCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCAcc                                                                     >  1:110759/1‑140 (MQ=255)

                                                                    cGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCa                                                                    >  2:179648/1‑140 (MQ=255)

                                                                          tGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAgg                                                              >  2:1432021/1‑140 (MQ=255)

                                                                            gTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCAc                                                                      <  2:433050/130‑1 (MQ=255)

                                                                            gTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCAc                                                                      >  1:433050/1‑130 (MQ=255)

                                                                              cAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGtctt                                                          <  2:865540/140‑1 (MQ=255)

                                                                              cAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGtctt                                                          <  2:837806/140‑1 (MQ=255)

                                                                              cAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGtctt                                                          <  1:1553672/140‑1 (MQ=255)

                                                                              cAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGtctt                                                          <  1:417626/140‑1 (MQ=255)

                                                                                gACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGtcttct                                                        <  1:168482/140‑1 (MQ=255)

                                                                                           gTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATgg                                             <  1:111826/140‑1 (MQ=255)

                                                                                             tGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGgcg                                           <  1:578506/140‑1 (MQ=255)

                                                                                               gggTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGcgcg                                         <  2:1319534/140‑1 (MQ=255)

                                                                                                ggTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCgg                                        <  1:885927/140‑1 (MQ=255)

                                                                                                  tAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGgag                                      <  1:704713/140‑1 (MQ=255)

                                                                                                  tAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGgag                                      <  1:996984/140‑1 (MQ=255)

                                                                                                  tAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGgag                                      <  2:141563/140‑1 (MQ=255)

                                                                                                       aCTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTa                                 >  1:1072842/1‑140 (MQ=255)

                                                                                                           ccAGCACCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGc                             <  1:179648/140‑1 (MQ=255)

                                                                                                                aCCGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGc                        >  2:1532318/1‑140 (MQ=255)

                                                                                                                 ccGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCg                       >  1:1286075/1‑140 (MQ=255)

                                                                                                                  cGCAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGa                      >  1:1148840/1‑140 (MQ=255)

                                                                                                                    cAGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCGCGCGTTTAGCCAATTGGTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCCCCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGAcc                    <  2:110759/140‑1 (MQ=255)

                                                                                                                     aGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCa                   <  2:771225/140‑1 (MQ=255)

                                                                                                                     aGGCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCa                   <  1:1384721/140‑1 (MQ=255)

                                                                                                                      ggCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCAc                  <  1:1532318/140‑1 (MQ=255)

                                                                                                                      ggCTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCAc                  <  2:902844/140‑1 (MQ=255)

                                                                                                                        cTTAGTGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTg                <  2:1148840/140‑1 (MQ=255)

                                                                                                                             tGAGGTCTTTTGCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCCCCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACcat           <  2:1474551/140‑1 (MQ=255)

                                                                                                                             tGAGATCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACcat           <  2:1072310/140‑1 (MQ=255)

                                                                                                                                 aTCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACcat           <  2:81002/136‑1 (MQ=255)

                                                                                                                                 aTCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACcat           >  1:81002/1‑136 (MQ=255)

                                                                                                                                 aTCTTTTTCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACCatcatc       >  2:520405/1‑140 (MQ=255)

                                                                                                                                     ttttCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACCAtcatcagtc   >  1:1488861/1‑140 (MQ=255)

                                                                                                                                      tttCG‑TATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACCAtcatcagtca  >  2:806419/1‑140 (MQ=255)

ACGATGCAGCTCAACCACGTGGTTACCCACGGCGGCGAACATGCGTTTCACCTGATGATAACGCCCTTCGCTGATGGTCAGACGAACCTGCGTTGGGGTAATCACTTCCAGCACCGCAGGCTTAGTGAGATCTTTTTCGTTATGCAGCTGCACGCCTTTAGCAAATTGCTCTGCCGTATCGTCAGCTACAGGTGATTCCAGTGTCACCAGATAGGTCTTCTCGCAATGATGGCGCGGAGAAGTAATGCGGTGCGACCACTGACCATCATCAGTCA  >  NC_000913/2279878‑2280152

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`