Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	14,204	Δ1 bp	coding (37/1131 nt)	dnaJ →	chaperone protein DnaJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	14,202	0	T	.	100.0%	295.6 / NA	70	coding (35/1131 nt)	dnaJ	chaperone protein DnaJ
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (39/31);  total (39/31)

GACAAAAAATAATCGCCCTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAGGAAGCTTATGAA  >  NC_000913/14068‑14332                                                                                                                                       |                                                                                                                                    gACAAAAAATAATCGTCCTATAAACGGATAATTATACTGACACAGGCGAAGGTGAATTTCTTCTCCGCCCTAGCATTCAGCTACGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTTGGCGttccaa                                                                                                                                <  2:1259845/140‑5 (MQ=255)        aataatCGCCCTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCg                                                                                                                        <  2:73030/140‑1 (MQ=255)              cGCCCTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAagag                                                                                                                  >  1:81547/1‑140 (MQ=255)                cccTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCGttc                                                                                                                                   <  1:712429/122‑2 (MQ=255)                cccTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCGttc                                                                                                                                   >  2:712429/1‑121 (MQ=255)                cccTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAag                                                                                                                    >  2:251359/1‑136 (MQ=255)                cccTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAag                                                                                                                    <  1:251359/136‑1 (MQ=255)                   tataAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGa                                                                                                             <  2:278122/140‑1 (MQ=255)                   tataAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGa                                                                                                             <  2:402938/140‑1 (MQ=255)                          gggTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGa                                                                                                      <  2:519281/140‑1 (MQ=255)                           ggTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAag                                                                                                                    >  2:353674/1‑125 (MQ=255)                           ggTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAag                                                                                                                    <  1:353674/125‑1 (MQ=255)                           ggTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGaa                                                                                                     >  1:1244697/1‑140 (MQ=255)                           ggTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGaa                                                                                                     >  1:168257/1‑140 (MQ=255)                               aTTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGc                                                                                                 >  2:293991/1‑140 (MQ=255)                               aTTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGc                                                                                                 >  2:508755/1‑140 (MQ=255)                                    aCTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACa                                                                                            <  2:168257/140‑1 (MQ=255)                                    aCTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACa                                                                                            <  2:535443/140‑1 (MQ=255)                                      tGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACaaa                                                                                          >  1:411467/1‑140 (MQ=255)                                        acacGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACg                                                                                        >  1:203466/1‑140 (MQ=255)                                        acacGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACg                                                                                        >  2:1419958/1‑140 (MQ=255)                                        acacGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACg                                                                                        >  2:1049089/1‑140 (MQ=255)                                          acGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCGGAAAGGCCTACAAACGcc                                                                                      >  1:617658/1‑140 (MQ=255)                                          acGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGcc                                                                                      <  1:293991/140‑1 (MQ=255)                                          acGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGcc                                                                                      >  2:434904/1‑140 (MQ=255)                                          acGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGcc                                                                                      >  1:848038/1‑140 (MQ=255)                                          acGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAAGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGcc                                                                                      >  2:897077/1‑140 (MQ=255)                                           cGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCt                                                                                     >  1:873843/1‑140 (MQ=255)                                             ggCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTgg                                                                                   <  2:1257920/140‑1 (MQ=255)                                             ggCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTgg                                                                                   >  2:1014650/1‑140 (MQ=255)                                              gCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGc                                                                                  >  1:1059607/1‑140 (MQ=255)                                               cGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGcc                                                                                 <  2:411467/140‑1 (MQ=255)                                                  aGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTgg                                                                                   >  1:1477343/1‑135 (MQ=255)                                                  aGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTgg                                                                                   <  2:1477343/135‑1 (MQ=255)                                                     ggAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGaaa                                                                           <  2:1059607/140‑1 (MQ=255)                                                      gAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAAt                                                                          <  1:1299952/140‑1 (MQ=255)                                                        aTTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGcc                                                                                      <  2:600708/126‑1 (MQ=255)                                                        aTTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGcc                                                                                      >  1:600708/1‑126 (MQ=255)                                                        aTTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATac                                                                        >  1:184911/1‑140 (MQ=255)                                                              tctcCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCg                                                                 >  2:1369878/1‑140 (MQ=255)                                                                 ccGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGAc                                                              <  1:1014650/140‑1 (MQ=255)                                                                 ccGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGAc                                                              <  2:203466/140‑1 (MQ=255)                                                                   gCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCg                                                            >  2:256995/1‑140 (MQ=255)                                                                       gTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAAc                                                        <  2:184911/140‑1 (MQ=255)                                                                       gTGCATTCATCTAGGGGCAATTTAAAAAAAATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCACCCCGGACCGTaa                                                         >  2:1510521/1‑140 (MQ=255)                                                                                   aGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACaaa                                            >  1:1048285/1‑140 (MQ=255)                                                                                         aaTTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGcc                                      >  2:1662306/1‑140 (MQ=255)                                                                                         aaTTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGcc                                      >  2:1521814/1‑140 (MQ=255)                                                                                         aaTTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGcc                                      >  2:633584/1‑140 (MQ=255)                                                                                         aaTTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGcc                                      >  1:1660474/1‑140 (MQ=255)                                                                                           tttAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGa                                    >  2:507294/1‑140 (MQ=255)                                                                                            ttAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAg                                   <  1:1049089/140‑1 (MQ=255)                                                                                              aaaaaaGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGc                                 <  1:1635540/140‑1 (MQ=255)                                                                                              aaaaaaGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGc                                 <  1:507294/140‑1 (MQ=255)                                                                                              aaaaaaGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGc                                 <  1:1662306/140‑1 (MQ=255)                                                                                                 aaaGATGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGaa                              <  2:873843/140‑1 (MQ=255)                                                                                                     aTGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGc                                       <  2:964726/127‑1 (MQ=255)                                                                                                     aTGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGc                                       >  1:964726/1‑127 (MQ=255)                                                                                                     aTGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAAttt                          >  1:393961/1‑140 (MQ=255)                                                                                                     aTGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAAttt                          >  1:457239/1‑140 (MQ=255)                                                                                                     aTGGCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAAttt                          >  2:618802/1‑140 (MQ=255)                                                                                                       ggCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTaa                        <  2:1660474/140‑1 (MQ=255)                                                                                                        gCTAAGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTaaa                       <  2:457239/140‑1 (MQ=255)                                                                                                            aGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAgaga                   <  1:256995/140‑1 (MQ=255)                                                                                                            aGCAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAgaga                   <  2:81547/140‑1 (MQ=255)                                                                                                              cAAGATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATc                 >  2:1005717/1‑140 (MQ=255)                                                                                                                 gATTATTACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAg              <  2:393961/140‑1 (MQ=255)                                                                                                                  attattACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAgg             >  1:1290426/1‑140 (MQ=255)                                                                                                                  attattACGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAgg             >  2:127263/1‑140 (MQ=255)                                                                                                                   ttattaCGAGATTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAGGa            <  1:127263/140‑1 (MQ=255)                                                                                                                            gaTTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAg              <  1:837592/129‑1 (MQ=255)                                                                                                                            gaTTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAg              >  2:837592/1‑129 (MQ=255)                                                                                                                             aTTTTAGGCG‑TTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAGGAAGCTTATGaa  >  1:263609/1‑140 (MQ=255)                                                                                                                                       |                                                                                                                                    GACAAAAAATAATCGCCCTATAAACGGGTAATTATACTGACACGGGCGAAGGGGAATTTCCTCTCCGCCCGTGCATTCATCTAGGGGCAATTTAAAAAAGATGGCTAAGCAAGATTATTACGAGATTTTAGGCGTTTCCAAAACAGCGGAAGAGCGTGAAATCAGAAAGGCCTACAAACGCCTGGCCATGAAATACCA‑CCCGGACCGTAACCAGGGTGACAAAGAGGCCGAGGCGAAATTTAAAGAGATCAAGGAAGCTTATGAA  >  NC_000913/14068‑14332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑