BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	157 (1.970)	142 (1.790)	73/274	0.0	63.7%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	6 (0.080)	142 (1.790)	73/274	0.0	63.7%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 305 total aligned reads displayed.

ATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362871‑3363140

ttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATgg                                                                                                                                      <  1:715130‑M1/9‑1 (MQ=255)

  cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGc                                                                                                                                     >  1:1229630‑M1/130‑139 (MQ=255)

  cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                    <  1:167375‑M1/11‑1 (MQ=255)

    tgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aa                                                                                                                                 <  2:291268‑M1/13‑1 (MQ=255)

     gaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aaa                                                                                                                                >  2:355848‑M1/127‑140 (MQ=255)

     ataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaa                                                                                                                               >  1:340836/1‑140 (MQ=255)

          gaTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAg                                                                                                                          >  2:710431/1‑140 (MQ=255)

            gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                         <  2:40589‑M1/21‑1 (MQ=255)

            gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                         >  1:64126‑M1/120‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAgg                                                                                                                         >  1:1081607/1‑137 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  1:1070515/1‑140 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      <  1:672555/140‑1 (MQ=255)

              gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                      >  2:672555/1‑140 (MQ=255)

                 atctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttaaatctaAGTAAATGGCG‑AAAAAAAAGGCAACa                                                                                                                    >  2:499723‑M1/115‑140 (MQ=255)

                   tGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTg                                                                                                                 >  2:803830/1‑140 (MQ=255)

                        gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                         <  2:1082337‑M1/21‑1 (MQ=255)

                        gggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAc                                                                                                             <  1:554083‑M1/33‑1 (MQ=255)

                         ggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAcg                                                                                                            >  1:95902‑M1/107‑140 (MQ=255)

                         ggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAcg                                                                                                            >  1:358379‑M1/107‑140 (MQ=255)

                             ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCt                                                                                                        >  1:287861‑M1/103‑140 (MQ=255)

                                   gAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTtgatga                                                                                                 >  1:444217/1‑140 (MQ=255)

                                             gaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGa                                                                                        <  1:1000426‑M1/54‑1 (MQ=255)

                                             aaTCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGAc                                                                                       >  2:97489/1‑140 (MQ=255)

                                              aatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGAc                                                                                       <  2:385949‑M1/55‑1 (MQ=255)

                                              aatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGAc                                                                                       <  1:762031‑M1/55‑1 (MQ=255)

                                              aTCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACa                                                                                      <  2:1071720/140‑1 (MQ=255)

                                               tCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  1:97489/140‑1 (MQ=255)

                                                  cTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACAt                                                                                     <  2:1069580/137‑1 (MQ=255)

                                                   tAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGt                                                                                 <  1:890505/140‑1 (MQ=255)

                                                   tAGGGGTGGATCTTAATATATC‑CATTAATTTTCCCCGTTAAGCCCTTTTTTGGCAAGGTGAATATTCACTGAAATTTTCAGAAAAT‑GCG‑GAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                <  2:340836/140‑1 (MQ=255)

                                                   gtcatttattatgtcattgacacgatcagttatccctgtgcctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTg                                                                                  <  1:48048‑M1/60‑1 (MQ=255)

                                                    aGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTc                                                                                <  1:351526/140‑1 (MQ=255)

                                                        gtAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            >  1:1180508/1‑140 (MQ=255)

                                                         tattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGa                                                                            >  2:1311523‑M1/75‑140 (MQ=255)

                                                         tAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAt                                                                           >  2:58441/1‑140 (MQ=255)

                                                          attatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGAt                                                                           <  1:1273930‑M1/67‑1 (MQ=255)

                                                                tAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  1:1250475/1‑140 (MQ=255)

                                                                tAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  1:1108684/1‑140 (MQ=255)

                                                                 aaTATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:1267097/1‑140 (MQ=255)

                                                                 aaTATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:43421/1‑140 (MQ=255)

                                                                 aaTATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:93468/1‑140 (MQ=255)

                                                                 aaTATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:1003368/1‑140 (MQ=255)

                                                                   ttgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCAttt                                                                  <  1:298226‑M1/76‑1 (MQ=255)

                                                                   tatatCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 <  1:607812/140‑1 (MQ=255)

                                                                      atCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCGGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGc                                                              >  1:24735/1‑140 (MQ=255)

                                                                        cGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:185234/1‑140 (MQ=255)

                                                                        cGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:868105/1‑140 (MQ=255)

                                                                        cGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:408968/1‑140 (MQ=255)

                                                                        cGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:401752/1‑140 (MQ=255)

                                                                             t‑attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  1:29029/140‑1 (MQ=255)

                                                                             t‑attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  2:82531/140‑1 (MQ=255)

                                                                             t‑attTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       <  2:1234204/140‑1 (MQ=255)

                                                                              agttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  2:1273930‑M1/54‑140 (MQ=255)

                                                                                 tatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCgg                                                    >  2:1000426‑M1/51‑140 (MQ=255)

                                                                                    tCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 >  2:1181515/1‑140 (MQ=255)

                                                                                    ccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGttt                                                 <  2:601180‑M1/93‑1 (MQ=255)

                                                                                     cctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  1:1338002‑M1/94‑1 (MQ=255)

                                                                                     cccGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                <  2:1108684/140‑1 (MQ=255)

                                                                                        gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1047843‑M1/97‑1 (MQ=255)

                                                                                        gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             >  1:1299170/1‑140 (MQ=255)

                                                                                        gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             >  2:109998/1‑140 (MQ=255)

                                                                                          gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:157186‑M1/99‑1 (MQ=255)

                                                                                              gcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGc                                                       >  1:91145‑M1/38‑124 (MQ=255)

                                                                                               caacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGTGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      >  2:1265920‑M1/37‑140 (MQ=255)

                                                                                                   atttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTa                                                >  1:203337‑M1/33‑126 (MQ=255)

                                                                                                   atttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTga                                  <  2:568871‑M1/108‑1 (MQ=255)

                                                                                                   atttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTga                                  <  1:956008‑M1/108‑1 (MQ=255)

                                                                                                    tttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaa                                 >  1:385949‑M1/32‑140 (MQ=255)

                                                                                                     tttGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  2:170054/140‑1 (MQ=255)

                                                                                                     ttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  2:853571‑M1/104‑1 (MQ=255)

                                                                                                     ttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                >  1:835754‑M1/31‑140 (MQ=255)

                                                                                                       ccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATT‑GTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaa                             <  1:803173‑M1/112‑1 (MQ=255)

                                                                                                             gaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAAt                        <  1:854528‑M1/118‑1 (MQ=255)

                                                                                                              aagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       >  2:298226‑M1/22‑140 (MQ=255)

                                                                                                              aagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       <  2:258422‑M1/119‑1 (MQ=255)

                                                                                                               agctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATgg                      >  2:1047843‑M1/21‑140 (MQ=255)

                                                                                                                   atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:183865/140‑1 (MQ=255)

                                                                                                                     tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:109998/140‑1 (MQ=255)

                                                                                                                       ttgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:534525‑M1/13‑140 (MQ=255)

                                                                                                                       aCTGATAGTATCAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:159538/1‑139 (MQ=255)

                                                                                                                       aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  1:898841/1‑140 (MQ=255)

                                                                                                                        tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:1215019‑M1/126‑1 (MQ=255)

                                                                                                                        tgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGa             >  2:956008‑M1/12‑140 (MQ=255)

                                                                                                                         gttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:288499‑M1/11‑140 (MQ=255)

                                                                                                                         gttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:48048‑M1/11‑140 (MQ=255)

                                                                                                                          gATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:589927/140‑1 (MQ=255)

                                                                                                                           tatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          <  1:1211994‑M1/132‑1 (MQ=255)

                                                                                                                            tAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:526702/131‑1 (MQ=255)

                                                                                                                            tAGTATCAGTAAATGGCG‑‑‑AAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:570065/1‑131 (MQ=255)

                                                                                                                             aGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:90803/1‑137 (MQ=255)

                                                                                                                              atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:1017240‑M1/126‑1 (MQ=255)

                                                                                                                              atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1017240‑M1/6‑131 (MQ=255)

                                                                                                                              atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  2:1342427‑M1/135‑1 (MQ=255)

                                                                                                                              atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatat       <  1:866742‑M1/135‑1 (MQ=255)

                                                                                                                               tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      >  2:1119073/1‑140 (MQ=255)

                                                                                                                                  aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:623675‑M1/2‑127 (MQ=255)

                                                                                                                                  aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           >  2:757120‑M1/2‑132 (MQ=255)

                                                                                                                                  aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACt           <  1:8116‑M1/131‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTGAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  2:794682‑M1/130‑1 (MQ=255)

                                                                                                                                   AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  2:731583‑M1/140‑1 (MQ=255)

ATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATT‑ATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362871‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.