Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG33.0% 185.6 / 18.0 105T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (18/51);  new base G (34/0);  total (54/51)
Fisher's exact test for biased strand distribution p-value = 2.93e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 110 total aligned reads displayed.

CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT  >  NC_000913/4568366‑4568639
                                                                                                                                          |                                                                                                                                            
cagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTa                                                                                                                                             >  2:892176/1‑140 (MQ=255)
   gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                          >  2:272085/1‑140 (MQ=255)
   gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaa                                                                                                                                          <  2:1112165/140‑1 (MQ=255)
      ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                                                                                                                                       <  2:114500/140‑1 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCAt                                                                                                                              >  1:607291/1‑140 (MQ=255)
              aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCAt                                                                                                                              >  2:1203284/1‑140 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATa                                                                                                                             >  1:56153/1‑140 (MQ=255)
                   ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATaacaa                                                                                                                         <  1:486292/140‑1 (MQ=255)
                        tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAaacaac                                                                                                                    <  2:1205852/140‑1 (MQ=255)
                                  tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCg                                                                                                        <  1:295394/140‑1 (MQ=255)
                                     cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGgag                                                                                                     <  1:27079/140‑1 (MQ=255)
                                     cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAACAAAT‑CCTTGT‑CCGgag                                                                                                     >  1:768097/1‑140 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGTTAAAAAAAAGG‑GGGATAACAAACAACT‑CCTTGT‑CCGGAG‑aa                                                                                                  >  1:429124/1‑140 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAAAAAAAAAAT‑CCTTGT‑CCGGAG‑aa                                                                                                  >  2:1186608/1‑140 (MQ=255)
                                         ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAA‑GGCATAACAAAAAACT‑CCCTTT‑CCGGGG‑aaac                                                                                                >  2:1259970/1‑138 (MQ=255)
                                            aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCa                                                                                             <  1:892176/140‑1 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑Cg                                                                                         >  1:124018/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAAAAACT‑CCTTTT‑CCGGAG‑AACCCCAA‑Cg                                                                                         >  2:734891/1‑140 (MQ=255)
                                               aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGA‑GGCATAAAAAAAAACC‑CCTTGT‑CCGGAG‑AACCCCAA‑Cg                                                                                         >  2:572010/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTGAAAAAAAAA‑GGGAAAAAAAAAAAAT‑CCCTTT‑TCGGAG‑GACCCCCA‑Cagg                                                                                       >  2:1312758/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGT‑GGCATAAAAAAAAAAC‑CCTTGT‑CCGGAG‑AACCCCAA‑Cggg                                                                                       >  2:125510/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAAAAAACAAAA‑CCCTTT‑CCCGAG‑AACCCCCA‑Cggg                                                                                       >  2:895640/1‑140 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAT‑GGCCTAACAAAAAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑Aggg                                                                                       >  2:138513/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑Cgggg                                                                                      >  1:1257137/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑Cgggg                                                                                      >  1:197012/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGA‑GGCATAAAAAAAAAAA‑CCTTGT‑CCGGAG‑AACCCCAA‑Cgggg                                                                                      >  2:1149436/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑Ccggg                                                                                      >  2:197719/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAACAACT‑CCTTTT‑CCGGAG‑AACCCCAA‑Cgggg                                                                                      >  1:1198996/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAAAAACA‑CCTTGT‑CCCGGG‑AACCCCAA‑Caggg                                                                                      >  2:547191/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAAAAAAAAACT‑CCTTTT‑CCGGGG‑AACCCCAA‑Cgggg                                                                                      >  1:1138944/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGC‑GGCATAACAAAAAAAA‑CCTTTT‑CCGGGG‑AACCCCAA‑Ccggg                                                                                      >  2:870318/1‑140 (MQ=255)
                                                   cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGa                                                                                     <  2:56153/140‑1 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGaaaa                                                                                  >  1:453568/1‑140 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                <  1:1186608/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                <  2:1027274/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                <  1:978279/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGaa                                                                              <  1:197719/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGG‑GGCATAAAAAAAAACA‑CCTTTT‑CCGGAG‑AACCCCAA‑CGGGGGAAACGaa                                                                              >  2:212864/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGA‑GGCATAAAAAAAAACC‑CCCTGT‑CCGGAG‑AACCCCAA‑CGGGGGAAAAGaa                                                                              >  2:13546/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGaaaa                                                                                  >  1:1150641/1‑135 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGaaaa                                                                                  <  2:1150641/135‑1 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGaaa                                                                             <  1:1149436/140‑1 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGG‑GGGATAACAAAAAAAG‑CCCTGTGCCGGGA‑ACCCCCAA‑GGGGGaaaaaaaa                                                                              >  2:1264210/1‑136 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAT‑GGGATAACAAACAACA‑CCCTTT‑CCGGAGAAACCCCAA‑CGGGGaaaagaaa                                                                              >  2:338030/1‑136 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAT‑GGCATAACAAAAAACT‑CCTTGT‑CCAGAG‑AAACCCCA‑CGGGGAAAAAGaaa                                                                             >  1:678662/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCaa                                                                        >  1:542482/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAAAAACT‑CCCTTT‑CCGGAG‑AACCCCCA‑CCGGGGAAAAGAAAATCaa                                                                        >  1:954821/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAAAAAAAAAAA‑CCTTGT‑CCGGGG‑AAACCCAACCGGGGAAAAGAAAAttaa                                                                         >  2:594150/1‑138 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACA‑GGGCTAACAAACAAATCCCTTTC‑CCGGGG‑AACCCC‑A‑CCGGGAAAAAGAAAATCaa                                                                        >  2:1136045/1‑140 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCTAAAAAAAGT‑GGCCTTAAAAACAACT‑CCTCGT‑CCTGCG‑AACCCCAA‑CCGGGGAAAAGAAATTCaa                                                                        >  2:1330331/1‑140 (MQ=255)
                                                                 tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAAt                                                                       <  2:1257137/140‑1 (MQ=255)
                                                                  ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATa                                                                      <  1:734891/140‑1 (MQ=255)
                                                                  ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATa                                                                      <  1:131461/140‑1 (MQ=255)
                                                                  ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATa                                                                      <  2:124018/140‑1 (MQ=255)
                                                                  ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATa                                                                      >  1:366376/1‑140 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGGAAACGAAATTCAATAcc                                                                    >  1:824249/1‑140 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGA‑GGCATAACAAAAAAAT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGGAAAAGAAAATCAATAcc                                                                    >  2:1014046/1‑140 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATAcc                                                                    >  1:16922/1‑140 (MQ=255)
                                                                    gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGAGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATGCAATAcc                                                                    <  2:282531/140‑1 (MQ=255)
                                                                       gACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGGG‑AACCCCAA‑AGGGGAAAAAGAAATTCAATACCCTc                                                                 >  2:535856/1‑140 (MQ=255)
                                                                          aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGT‑GGCATAACAAAAAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGt                                                              >  1:714416/1‑140 (MQ=255)
                                                                          aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAAAAAAAAACT‑CCTTGT‑CCGGAG‑AACCCCCA‑CGGGGGAAAAGAAAATCAAAACCGTCggg                                                              >  2:589979/1‑139 (MQ=255)
                                                                            aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAC‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTaa                                                            <  1:654844/140‑1 (MQ=255)
                                                                                   gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                     <  1:125510/140‑1 (MQ=255)
                                                                                    caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                    <  1:682899/140‑1 (MQ=255)
                                                                                    caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGA‑GGCATAAAAAAAAAAA‑CCCTGT‑CCGGAG‑AAACCCAA‑CGGGGGAAACGAAATTCAATAACGACGGGAATGACGaaa                                                    >  2:827291/1‑140 (MQ=255)
                                                                                    agaaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                    <  1:328814/138‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  1:547191/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  2:607291/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  >  1:540836/1‑140 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  1:827291/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  1:895640/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                  <  1:212864/140‑1 (MQ=255)
                                                                                       aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGc                                                 <  1:572010/140‑1 (MQ=255)
                                                                                            tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGT‑GGCATAACAAAAAACT‑CCTTGT‑CCGGAG‑AAACCCAA‑AGGGGGAAACGAAAATCAAAACCGTCGGGAATGACGAAAAGCAgggg                                            >  2:383558/1‑138 (MQ=255)
                                                                                            tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAAT‑GGCATAAAAAACAACA‑CCATGT‑CCCGGG‑AACCCCCA‑CGGGGGAAAAGAAAATTAATAACGCCCGGGATAACGAAAGGCAgggg                                            >  2:166916/1‑138 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                         <  1:1192804/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                         <  2:453568/140‑1 (MQ=255)
                                                                                                 aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGGCGTAA‑AAAAAAAT‑CCATGTGCCGGGA‑AACCCCCC‑GAGGGGAAACAAAATT‑AATACCGGCAGTGCTGGCGAAAGGGAAGAGAGaaa                                       >  2:328814/1‑139 (MQ=255)
                                                                                                      aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                  <  1:13546/140‑1 (MQ=255)
                                                                                                      aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCATGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                  <  1:948658/140‑1 (MQ=255)
                                                                                                       cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                 <  2:548937/140‑1 (MQ=255)
                                                                                                       cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGG‑GGCATAACAAACAACT‑CCTTGT‑CCGGGG‑AAACCCCA‑CGGGGGAAAAGAAATTCAAAACCGTCGGGAAAGACGAAAAGCAGGTGGGAAAGGGaaa                                 >  2:716143/1‑139 (MQ=255)
                                                                                                       cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAAAAAAAAACT‑CCTTGT‑CCGGGG‑AACCCCAA‑CGGGGGAAAAGAAAATCAATACCCCCGGGAATGAAGAAAAGCAGGggggaaggggaaa                                 >  2:381201/1‑139 (MQ=255)
                                                                                                           aTCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAAAAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGGAAAAGAAAATCAATACCGTCGGTATTTACGAAAGGGAGGGGGGAAGGGGAACgaga                             >  2:804618/1‑140 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                            <  2:714416/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                            <  2:366376/140‑1 (MQ=255)
                                                                                                             cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGT‑GGCATAACAAAAAACT‑CCTTGT‑CCGGGG‑AACCCCCA‑CGGGGGAAAAGAAAATCAATACCGTCGGTAATGAAGAAAGGCAGGGGAGAAGGGGAAAGAGACt                           >  2:5546/1‑140 (MQ=255)
                                                                                                              gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGCCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                          <  1:381201/140‑1 (MQ=255)
                                                                                                                   aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                     <  2:542482/140‑1 (MQ=255)
                                                                                                                   aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt                     <  1:166916/140‑1 (MQ=255)
                                                                                                                      cAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTa                  <  2:184114/140‑1 (MQ=255)
                                                                                                                       aGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                 <  1:594150/140‑1 (MQ=255)
                                                                                                                          gTGGCGGCATGGCGGGGAAAAAAAACG‑GGCATAAAAAACAAAT‑CCTTGT‑TCGGGG‑AACCCCCA‑CGGGGGAAAAGAAAATCAATACCGTCGGGAAGGACGAAAGGCAGGGGGGGAGGGCAACGAGACTGCAAATGTACtta              >  2:1150780/1‑138 (MQ=255)
                                                                                                                                gcATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa        <  1:725556/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa    <  2:768097/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa    <  1:1203284/140‑1 (MQ=255)
                                                                                                                                    ggCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa    <  1:127518/140‑1 (MQ=255)
                                                                                                                                      cGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt  <  1:1330331/140‑1 (MQ=255)
                                                                                                                                      cGGGTAAAAAAAAGG‑GGGATAAAAAAAAACA‑CCTTGT‑CCGGAG‑AACCCCAA‑AGGGGGAAAAGAAAATCAATAACCTCGGGAAAGACGAAAAGCAGGGGAGAAAGGGAACGAGAATGCAAATGTACTGAAATTTATGTaaa  >  2:655496/1‑139 (MQ=255)
                                                                                                                                          |                                                                                                                                            
CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGT‑GGCATAACAAACAACT‑CCTTGT‑CCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAT  >  NC_000913/4568366‑4568639

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑