Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG32.5% 234.6 / 24.6 127T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (23/62);  new base G (41/0);  total (65/62)
Fisher's exact test for biased strand distribution p-value = 6.56e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 133 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568369‑4568641
                                                                                                                                       |                                                                                                                                            
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaa                                                                                                                                          >  2:1752367/1‑140 (MQ=255)
   ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa                                                                                                                                       <  1:1013430/140‑1 (MQ=255)
    cAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTAGACAGATACGCAGCAAACTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaa                                                                                                                                      >  2:511900/1‑139 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                     <  1:1752367/140‑1 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                     <  2:318391/140‑1 (MQ=255)
     aGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACg                                                                                                                                     <  2:2297567/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  2:1747123/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCa                                                                                                                                <  2:1167112/140‑1 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCAt                                                                                                                               >  1:1320657/1‑140 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                              <  1:38359/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa                                                                                                                              <  1:1828469/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATaaaaaa                                                                                                                         >  1:1377028/1‑140 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac                                                                                                                        <  1:1061647/140‑1 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAacaaacaaa                                                                                                                     >  2:1624303/1‑139 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                  <  1:2125872/140‑1 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACCCCTTTT‑CCg                                                                                                          >  2:938517/1‑140 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGCCTAAAAAAAAAAACCTTTT‑CCg                                                                                                          >  2:242185/1‑140 (MQ=255)
                                 ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGga                                                                                                        <  1:260454/140‑1 (MQ=255)
                                  cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGgag                                                                                                       >  1:1657004/1‑140 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGaa                                                                                                     >  1:1256403/1‑140 (MQ=255)
                                       tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAAAAACTCCCTTT‑CCGGAGAAc‑cc                                                                                                 >  2:504214/1‑140 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCaa                                                                                              <  1:2044168/140‑1 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCCTAACAAAAAAACCCCTTT‑CCGGAGAAc‑cccca                                                                                              >  2:1371445/1‑138 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAAATCCTTGT‑CCGGAGAAC‑CCCAACg                                                                                            >  1:1802494/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCCTTT‑CCGGAGAAC‑CCCAACg                                                                                            >  1:1754256/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACTGGCATAAAAAAAAACTCCCTGT‑CCCGAGAAA‑CCCCAca                                                                                            >  2:2044168/1‑139 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATATAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGGAC‑CCCCACggg                                                                                          >  2:2151313/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCATAACAAAAAACCCCATGT‑CCCGAGAAC‑CCCCAAggg                                                                                          >  1:1107391/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAAAAAACAACTTCCTAT‑CCGGAGAAC‑CCCAACgcg                                                                                          >  1:387881/1‑138 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAATCCTTGT‑CCGGAGAAC‑CCCAACggg                                                                                          >  2:1464616/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACCTGGCCTAAAAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACgggg                                                                                         >  1:29389/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACgggg                                                                                         >  1:528859/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAACAACTCCTTGT‑CCGGAGAAA‑CCCCACcggg                                                                                         >  2:109289/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAACAACCCCCTGTACCGGAAACC‑CCCACCggg                                                                                          >  2:2317607/1‑140 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGa                                                                                        <  2:1657004/140‑1 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGa                                                                                        <  1:2267954/140‑1 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGgaaa                                                                                     >  1:1023970/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGaaaa                                                                                     >  1:2068306/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGaaaa                                                                                     <  1:546844/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACg                                                                                   <  1:242185/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACg                                                                                   <  1:1240067/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACg                                                                                   <  2:327527/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACg                                                                                   <  2:1256403/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGaa                                                                                 >  1:1622738/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAA‑CCCAACGGGGGAAACGaa                                                                                 >  1:859562/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACAAGGCATAAAAAACAACACCTTGT‑CCCGAGAAC‑CCCAACGGGGAAAAAGaa                                                                                 >  2:1240067/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAACTCCTTTT‑CCGGAGAAC‑CCCAACGGGGAAAAAGaa                                                                                 >  1:1924646/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGT‑CCGGAGAAC‑CCCCACGGGGGAAAAGaa                                                                                 >  2:904171/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGaaa                                                                                >  1:1383815/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGaaa                                                                                >  1:462284/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCAAAAAAAAAAAACCCCTTT‑CCGGGGAAA‑CCCCACAGGGGAAACGaaa                                                                                >  2:490293/1‑140 (MQ=255)
                                                          cAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAAtt                                                                              <  1:490293/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGGAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAATCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAAAGAAAATCaa                                                                           >  2:1813504/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCaa                                                                           >  1:232675/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATAACAAACAAATCCTTGT‑CCGGAGAAA‑CCCCACGGGGGAAAAGaaaattaa                                                                           >  2:2260090/1‑135 (MQ=255)
                                                               ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATa                                                                         <  1:2206939/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATAcc                                                                       <  1:1311506/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGGATAAAAAAAAAATCCTTTT‑CCGGAGGAA‑CCCAACGGGGGAAAAGAAAATCAAAAcc                                                                       >  2:560866/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGGAAAACAAACAACTCCTTGT‑CCGGGGAAA‑CCCCACGGGGGAAAAGAAAATCAAAAccc                                                                      >  2:2004091/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAATCCTTGT‑CCGGAGAAC‑CCCCACGGGGAAAAAGAAAATCAAAAccc                                                                      >  2:1320101/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAACGGGGGGAAACAAACAAAACCCTTT‑TCCGACAAG‑CCCAACGGGGCAAAAGAAAATCAATAccc                                                                      >  2:1410090/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGGGGCATAACAAACAACACCTTTT‑TCGGAGAAA‑CCCAACCGGGGAAAAGAAAATCAAAAccc                                                                      >  2:1311506/1‑139 (MQ=255)
                                                                  tCGACAGAAACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAAAAAACAACTTCCATT‑TCGGGGAACACCCACGGGGGAAAAGGAAGTTCataacc                                                                       >  2:1742987/1‑135 (MQ=255)
                                                                   cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGt                                                                     <  1:2317607/140‑1 (MQ=255)
                                                                       aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCCTAACAAAAAACTCCTTGT‑CCGGGGAAC‑CCCAACGGGGGAAAAGAAAATCAATACCCTCggg                                                                 >  2:1588925/1‑139 (MQ=255)
                                                                         gacagcagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                               <  1:678742/136‑1 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGGATAAAAAACAACCCCTTGT‑CCGGAGAAC‑CCCAACGGGGGAAAAGAAAATTAAAACCGTCGGGAATG‑a                                                           >  2:1363449/1‑140 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGCGAAAAAAACCTGGCAAAAAAAACAACACCATGT‑TCGGCGAAG‑CCCCACTGGGGAAACGAAAATCAAAACCGGCGGtcaaga                                                            >  2:367328/1‑135 (MQ=255)
                                                                              cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACg                                                         <  1:1588925/140‑1 (MQ=255)
                                                                              cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACg                                                         <  1:1320101/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGaa                                                       <  1:2004091/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATG‑ACGaa                                                       >  1:2081186/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGaaa                                                      <  1:2260090/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGaaa                                                      <  1:1464616/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAgg                                                    <  1:367328/140‑1 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAATCCTTGT‑CCGGGGAAC‑CCCCACGGGGGAAAAGAAAATTAATACCGTCGGGAATG‑ACGaaaagg                                                   >  2:2340086/1‑137 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGCATAAAAAACAACACCTTGT‑CCGGGGAAA‑CCCCACCGGGAAAACGAAAATCAAAACCGTCGGGAAAG‑ACGAAAggaccctt                                              >  2:678742/1‑134 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAACTCCTTTT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAAATCAATACCGTCGGGAATG‑ACGAAAAGCAgggg                                              >  2:182238/1‑138 (MQ=255)
                                                                                          aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTga                                             <  1:65661/140‑1 (MQ=255)
                                                                                            agaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTgaga                                           <  1:1816371/138‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATG‑ACGAAAAGCAGGGGGGAAg                                         >  2:1357535/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAggg                                       <  1:904171/140‑1 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGaaa                                                      >  1:615588/1‑122 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGaaa                                                      <  2:615588/122‑1 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGGGGCGTAACAAACAACTCCCTCT‑TCTGTGAAC‑CCCCACGGGGAAAACAAAAATCAAAATCCCGGGGAAAG‑ACCAAAAGCAGGTGAGGAGGGGAAc                                   >  2:858535/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTTT‑CCGGGGAAC‑CCCCACGGGGAAAACGAAAATCAATAACGTCGGGAAAG‑ACGAAAAGCAGGGGAGAAAGGCaaa                                   >  2:2045014/1‑139 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2151313/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:483606/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:1326053/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:2340086/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAAAGAAATTCAATAACGTCGGGAATGAACGAAA‑GCAAGAGGGAAGGGGAAagagct                              >  2:1816371/1‑138 (MQ=255)
                                                                                                         aggggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:94146/138‑1 (MQ=255)
                                                                                                          cGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAAAAACTCCCTGT‑CCGGGGAAC‑CCCAACGGGGGAAAAGAAAATCAAAACCGTCGGGAATG‑ACGAAAAGCAGGGGGGAAGGGCAACgagaat                             >  2:1331028/1‑138 (MQ=255)
                                                                                                           gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                            <  2:1377028/140‑1 (MQ=255)
                                                                                                           gggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                            <  2:453932/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:2072960/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:1622738/140‑1 (MQ=255)
                                                                                                                    aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  2:459182/140‑1 (MQ=255)
                                                                                                                            ggcATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTc           <  2:1060957/140‑1 (MQ=255)
                                                                                                                                 ggCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:80893/140‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                            
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGT‑CCGGAGAAC‑CCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATG‑ACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568369‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑