Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4460CA27.7% 188.2 / 23.9 94intergenic (‑190/‑17)ttdR/ttdADNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (15/53);  new base A (22/4);  total (37/57)
Fisher's exact test for biased strand distribution p-value = 3.57e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 114 total aligned reads displayed.

CCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAA  >  NC_000913/3206307‑3206584
                                                                                                                                             |                                                                                                                                             
ccATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATAc                                                                                                                                               <  2:1385063/140‑1 (MQ=255)
ccATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATAc                                                                                                                                               <  2:510942/140‑1 (MQ=255)
        tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAATg                                                                                                                                       >  2:2225423/1‑140 (MQ=255)
           tctGGCGCAATATTCATTCTTATTTTCGCGTTTATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑g                                                                                                                                   <  1:2539924/140‑1 (MQ=255)
           tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAATTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑g                                                                                                                                   <  1:2021518/140‑1 (MQ=255)
           tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑g                                                                                                                                   <  1:2706932/140‑1 (MQ=255)
           tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑g                                                                                                                                   <  1:2530255/140‑1 (MQ=255)
           tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑g                                                                                                                                   <  1:185948/140‑1 (MQ=255)
             tGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGA‑ggt                                                                                                                                 >  2:831933/1‑138 (MQ=255)
               gcgcAATATTCATTCTTATTTTCGCGTTTATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAAACAAAAAAAAAAAATGGA‑GGTgg                                                                                                                               >  2:2539924/1‑139 (MQ=255)
               gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GGATTTTTTCAAACAAAAAAAAAAAATGGA‑GTTGc                                                                                                                               >  2:1210873/1‑140 (MQ=255)
               gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCCGACAAAAAAAAAAAATGGA‑GTTGc                                                                                                                               >  1:56230/1‑140 (MQ=255)
                cgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGTGGAATTTTTTC‑GACAAAAACAAAAAATGGA‑ggttgc                                                                                                                              >  2:2804020/1‑135 (MQ=255)
                   aaTATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCatg                                                                                                                           <  1:2424274/140‑1 (MQ=255)
                    atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAACAAAAAAAGGA‑GGTGGCatga                                                                                                                          >  2:2424274/1‑140 (MQ=255)
                    atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTTAGACAAAAACAAAAAAAGGA‑GGTGGCatga                                                                                                                          >  2:2706932/1‑140 (MQ=255)
                         cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTTAGACAAAAAAAAAAAATGGG‑GGTGCCATGGTGAgg                                                                                                                     >  2:1900011/1‑139 (MQ=255)
                         cattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCCGACAAAAACAAAAAAAAGA‑GGTGCCATGATGAgg                                                                                                                     >  1:449339/1‑139 (MQ=255)
                           ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑Ga                                                                                                                  <  2:2509632/140‑1 (MQ=255)
                           ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑Ga                                                                                                                  <  1:1900011/140‑1 (MQ=255)
                           ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑Ga                                                                                                                  <  1:1700369/140‑1 (MQ=255)
                             cTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAAAGGA‑GGTGGCATGATGAggggaa                                                                                                                 >  2:65678/1‑135 (MQ=255)
                               tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCCGACAAAAAAAAAAAATTGA‑GGTGGCATGATGAGC‑Gaaaaa                                                                                                              >  1:2412085/1‑138 (MQ=255)
                                    tCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGtaataa                                                                                                         <  2:250446/140‑1 (MQ=255)
                                      gcgTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAAAGGA‑GGTGGCATTATGAGC‑GGAAGgaaaaaaa                                                                                                       >  2:1533050/1‑138 (MQ=255)
                                        gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCaa                                                                                                     <  2:1419747/140‑1 (MQ=255)
                                        gTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCaa                                                                                                     <  1:1297146/140‑1 (MQ=255)
                                         ttGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAAc                                                                                                    <  1:2614039/140‑1 (MQ=255)
                                         ttGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAAc                                                                                                    <  1:2658423/140‑1 (MQ=255)
                                         ttGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAAAACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAAc                                                                                                    <  2:1873691/140‑1 (MQ=255)
                                            aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAgg                                                                                                 <  1:386486/140‑1 (MQ=255)
                                            aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAgg                                                                                                 <  2:2625452/140‑1 (MQ=255)
                                             ttCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GGATTTTTTCATACAAAAAAAAAAAATGGA‑GGTTGCATGATGAGC‑GAAAAGAATAAACaaaaagc                                                                                                >  2:1297146/1‑135 (MQ=255)
                                             ttCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGc                                                                                                <  1:2804020/140‑1 (MQ=255)
                                             ttCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGc                                                                                                <  1:1210873/140‑1 (MQ=255)
                                             cagaCGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGc                                                                                                <  1:1372137/137‑1 (MQ=255)
                                              tCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCa                                                                                               <  2:1712640/140‑1 (MQ=255)
                                                   acaggTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGaa                                                                                          <  1:2012592/136‑1 (MQ=255)
                                                   aaCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGaa                                                                                          <  1:1533050/140‑1 (MQ=255)
                                                    aCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAAAGGA‑GGTGGCATGATGAGC‑GAAAGTAATAAAGAACAAGCCGTGAAt                                                                                         >  1:1115175/1‑140 (MQ=255)
                                                        ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAATAAAAAAAATGGA‑GTTGCCATGATGAGC‑GAAAGGAATAAACAACAGGCAGTGAATAAGt                                                                                     >  1:477877/1‑140 (MQ=255)
                                                           aTTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTCACACAAAAACAAAAAAAGGG‑GGTGCCCTGATGAGC‑GAAAAAAAAAAAAAACAAGCAGGGAATaaaactg                                                                                  >  2:1372137/1‑135 (MQ=255)
                                                              aCATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACag                                                                               <  1:2410141/140‑1 (MQ=255)
                                                                atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTTTGACAAAAAAAAAAAATAGA‑GGTTGCATGATGAGC‑GGAAGTAAAAAACAAAAAGCAGGGAATAAAttttttctt                                                                             >  2:2366767/1‑133 (MQ=255)
                                                                  atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCCAACAAATAAAAAAAATGGA‑GTTGGCATGATGAGC‑GGAAGAAATAAACAACAAGCAGGGAAAAAATTTAAAgagaa                                                                           >  2:1919700/1‑139 (MQ=255)
                                                                  atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGA‑GTTGCCATGATGAGG‑GAAAAAAAAAAACAACAGGCAGAGAATAAAATGACAGAGAt                                                                           >  2:2894020/1‑140 (MQ=255)
                                                                  atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTTACAAAAAAAAAAAAAATGGA‑GGTGGCATGATGAGC‑GGAAGGAAAAAAAAAAAAGCAGGGAAAAAAATGACAgagaa                                                                           >  2:2602832/1‑139 (MQ=255)
                                                                      aCGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTCAGACAAAAACAAAAAATTGA‑GGTGTCCTGATGAGG‑GAAAAGAAAAAACAAAAAGCAGGGAAAAAAATTACAGAGAATG‑tt                                                                      >  2:3055866/1‑139 (MQ=255)
                                                                       cGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTCAGACAAAAAAAAAAAATGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAAAAACAAGCAGTGAATAAGATGACAGAGATTG‑ttg                                                                     >  2:2230015/1‑138 (MQ=255)
                                                                          tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAACAAAAAAAGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAACAAAAAGCAGTGAAAAAGTTGACAGAGATTG‑TCGCTa                                                                  >  2:104449/1‑140 (MQ=255)
                                                                          tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTCAGACAAAAAAAAAAAATGGA‑GTTGGCATGATGAGC‑GAAAAGAATAAAAAAAAAGCAGGGAAAAAAATGAAAAAGAATG‑TCGCTa                                                                  >  2:2426494/1‑140 (MQ=255)
                                                                            gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCACACAAAAAAAAAAAATGGA‑GTTGCCCTGATGAGG‑GAAAAGAATAAAAAAAAAGCAGTGAAAAAAATGAAAGAGATTT‑TTGCTaaa                                                                >  2:2957558/1‑139 (MQ=255)
                                                                             cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGGG‑GAATTTTTCC‑GACAAAAAAAAAAAATTGA‑GGTTCCATGATTAGCGGAAAGAAAAAAAAAAAAGG‑AGGGAAAAAATTTAAAAAGATTG‑TTGCTTACt                                                               >  2:784979/1‑140 (MQ=255)
                                                                             cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GGATTTTTTCAAACAAAAAAAAAAAAATGA‑GGTGGCATGATGGGG‑GGAAAAAAAAAAAAAAAAGCAGGGAATAAATTGAAAAAGAATT‑TTGGTAACt                                                               >  2:1417066/1‑140 (MQ=255)
                                                                             cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGA‑GGTGCCATGATTAGC‑GGAAATAATAAACAAAAAGCAGGGAATAAATTGAAAGAGAATG‑TTGCttaat                                                               >  2:598641/1‑136 (MQ=255)
                                                                              aaaaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACtt                                                              <  2:2596793/140‑1 (MQ=255)
                                                                                aaaaTATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑AAATTTTTCCAAAAAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTG‑TCGCTAACTTTa                                                            <  2:3166198/140‑1 (MQ=255)
                                                                                  aaTATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGG‑GGTGCCATGATGAGC‑GAAAGAAAAAAGAAACAAGCAGTGGATAAATTGAAAAAGATTG‑TCGCTAAATTTatc                                                          >  2:1859485/1‑138 (MQ=255)
                                                                                      aaaaaCCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGAAAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCa                                                      <  1:1975982/139‑1 (MQ=255)
                                                                                       aaaaCCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATAAAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCAt                                                     <  1:598641/140‑1 (MQ=255)
                                                                                       aaaaCCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGAAAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCAt                                                     <  1:1944795/140‑1 (MQ=255)
                                                                                          aCCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGAt                                                  <  1:832528/140‑1 (MQ=255)
                                                                                              caTTTTTAGTGGTAGTTTGTGGC‑GGT‑GGATTTTTTCAGACAAAAAAAAAAAAAGGA‑GGTGGCATGATGAGG‑GGAAGGAAAAAACAAAAAGGAGTGAAAAAAATGACAGAGAATT‑TTGCTAAATTTTCCGCCATGAttttt                                              >  2:419741/1‑138 (MQ=255)
                                                                                              caTTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAATGGA‑GGTGGCATGATGAGG‑GAAAAAAATAAAAAACAAGCAGTGAATAAATTGACAGAGATTG‑TTGCTAACTTTACCGCCCTGAttttt                                              >  2:1355164/1‑138 (MQ=255)
                                                                                              caTTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAGACAAAAAAAAAAAAAGGG‑GGTGGCCTTATGAGC‑GGAAGAAATAAACAAAAAGCAAGGAATAAATTGGAAGAGAATG‑TCGCTAACTTTACCGCCCAGATTTCt                                              >  2:946812/1‑140 (MQ=255)
                                                                                                   ttAGTGGTAGTTTGTGGG‑GGT‑AAATTTTTCCAGAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTAccag                                         <  2:2566042/140‑3 (MQ=255)
                                                                                                    tAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGa                                        <  1:65678/140‑1 (MQ=255)
                                                                                                     aGTGGTAGTTTGTGGC‑GGT‑GAAATTTTTCCGACAAAAACAAAAAATGGA‑GTTGGCCTGATGAGG‑GGAAAAAATAAACAACAAGGAGAGAAAAAGATTGCAGAGAGTG‑TCACTAAATTTTACCCCCTGATTTTTTccccca                                       >  2:351618/1‑137 (MQ=255)
                                                                                                     aGTGGTAGTTTGTGGC‑GGT‑AATTTTTTCCAGAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGC‑AAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGaa                                       <  2:925740/140‑1 (MQ=255)
                                                                                                      gTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTCCTACCCGAAt                                      <  2:307281/140‑1 (MQ=255)
                                                                                                       tGGTAGTTTGTGGC‑GGT‑GAATTTTTTCAAACAAAAACAAAAAATGGAGGTTGCC‑TGATGAGG‑GGAAAAAAAAAACAAAAGGCAGTGAAAAAATTTACAGAGATTG‑TTGCTAAATTTTCCCCCCTGATTTTTTCCCCAATg                                     >  2:2861017/1‑140 (MQ=255)
                                                                                                         gTAGTTTGTGGC‑GGT‑GAATTTTTTCAAACAAAAAAAAAAAATGGG‑GGTGCCCTGGTGAGG‑GGAAGTAATAAGGAAAAAGCAGGGAAAAAAATGGCAGAGATTG‑TCGCTAACTTTTACCCCACTATTTTTACCCGAATGcc                                   >  2:670801/1‑140 (MQ=255)
                                                                                                           aGTTTGTGGC‑GGT‑GAATTTTTTCCCACAAAAAAAAAAAAAGGG‑GTTGGCCCGATGAGG‑GGAAGGAATAAACAAAAAGGAGAGAAAAAATTGACAGAGAATGTTGGTTAATTTTACC‑CCATAATTTTTTCCCCAATTCCtg                                 >  2:1695044/1‑140 (MQ=255)
                                                                                                           aGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtg                                 <  1:1913459/140‑1 (MQ=255)
                                                                                                            gTTTGTGGC‑GGT‑GAATTTTTTCCGACAAAAAAAAAAAATGGG‑GGTGGCATGGTGAGG‑GAAAAAAAAAAAAAAAAAGCAGTGAAAAAATTGACAGAGATTG‑TTGCTTACTTTTCCCCCCTGATTTCTACCCGAAAGCCtga                                >  2:1411655/1‑140 (MQ=255)
                                                                                                             tttGTGGC‑GGT‑GAATTTTTTCAGACAAAAACAAAAAATGGA‑GGTGGCATGATGAGG‑GAAAGGAATAAAAAACAAGCAGTGAATAAATTGACAGAGAATG‑TCGCTAACTTTACCCCCCTGATTTTTACCCCAATGCCtgat                               >  2:1066770/1‑140 (MQ=255)
                                                                                                              ttGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                              <  1:1779275/140‑1 (MQ=255)
                                                                                                              ttGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                              <  1:1859485/140‑1 (MQ=255)
                                                                                                              ttGTGGC‑GGT‑GAATTTTTCCAGAAAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                              <  1:2894020/140‑1 (MQ=255)
                                                                                                              ttGTGGC‑GGT‑AAATTTTTCAAAAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGG‑AAAAGTAATAACCAACAGGCAGTAAAAAAGTTAACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                              <  2:449339/140‑1 (MQ=255)
                                                                                                                  ggC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgt                          <  2:477877/140‑1 (MQ=255)
                                                                                                                   gC‑GGT‑GATTTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg                         <  1:104449/140‑1 (MQ=255)
                                                                                                                   gC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg                         <  1:2426494/140‑1 (MQ=255)
                                                                                                                       gT‑GAATTTTTTCAGACAAAAACAAAAAATGGA‑GGTGGCATGATGGGG‑GAAAGTAATAAACAACAAGGAGTGAATAAAATGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTTTACCCGAAAGGCTGATGACgtgggg                      >  2:2985400/1‑138 (MQ=255)
                                                                                                                          gAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                    <  1:149647/140‑1 (MQ=255)
                                                                                                                          gAATTTTTCAAGACAAATAAAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                    <  2:1115175/140‑1 (MQ=255)
                                                                                                                          aaaTTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                    <  1:670801/139‑1 (MQ=255)
                                                                                                                          aaaTTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa                    <  1:2519137/139‑1 (MQ=255)
                                                                                                                                 tCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTa             >  1:1819734/1‑140 (MQ=255)
                                                                                                                                  ccAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa            >  1:228792/1‑140 (MQ=255)
                                                                                                                                  ccAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa            <  1:2230015/140‑1 (MQ=255)
                                                                                                                                  ccAGAAAAATAAAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa            <  2:2412085/140‑1 (MQ=255)
                                                                                                                                    aGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa          <  1:1411655/140‑1 (MQ=255)
                                                                                                                                    aGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa          <  2:1819734/140‑1 (MQ=255)
                                                                                                                                     gACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg                         <  1:536471/124‑1 (MQ=255)
                                                                                                                                     gACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAAc         >  2:1425347/1‑140 (MQ=255)
                                                                                                                                        aaaTACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa          <  1:2231139/136‑1 (MQ=255)
                                                                                                                                        aaaTACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaaaa          >  2:2231139/1‑136 (MQ=255)
                                                                                                                                          aTACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTa    >  2:1093503/1‑140 (MQ=255)
                                                                                                                                            aCAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTAAATAAGTTGACAGAGATTG‑TCGCTAATTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTaaa  <  1:3055866/140‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                             
CCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGC‑GGT‑GAATTTTTCCAGACAAATACAAAAACTGGA‑GTTGCCATGATGAGC‑GAAAGTAATAAGCAACAGGCAGTGAATAAGTTGACAGAGATTG‑TCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAAAACAGCTAAA  >  NC_000913/3206307‑3206584

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑