Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG28.9% 415.1 / 32.2 203T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (44/99);  new base G (58/0);  total (104/99)
Fisher's exact test for biased strand distribution p-value = 9.47e-23
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 211 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568369‑4568641
                                                                                                                                        |                                                                                                                                           
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaa                                                                                                                                         >  2:770653/1‑140 (MQ=255)
  gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaa                                                                                                                                       >  1:431510/1‑140 (MQ=255)
   ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaaa                                                                                                                                      <  1:828910/140‑1 (MQ=255)
       aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCC‑GGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTgg                                                                                                                                 >  2:459933/1‑140 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATa                                                                                                                             <  2:1198388/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATa                                                                                                                             >  2:138174/1‑140 (MQ=255)
             aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaa                                                                                                                            <  1:1481795/140‑1 (MQ=255)
               cGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaaca                                                                                                                          <  1:185457/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaacaaa                                                                                                                        >  1:1297615/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaacaaa                                                                                                                        <  1:138174/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaaaaaa                                                                                                                        >  1:228414/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGCATaacaaa                                                                                                                        >  2:2062667/1‑140 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGGTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaacaaac                                                                                                                       <  1:1349206/140‑1 (MQ=255)
                  cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAAGGCATaaaaaaa                                                                                                                       >  2:1300686/1‑139 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaaa                                                                                                                                      <  2:480348/122‑1 (MQ=255)
                       aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTc                                                                                                                  <  2:1842129/140‑1 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  2:1994821/140‑1 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  1:12699/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCGTAACAAACAACACCtttt                                                                                                             >  2:1762410/1‑138 (MQ=255)
                               gagacagttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                          <  1:196753/133‑1 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑aa                                                                                                    >  1:992675/1‑140 (MQ=255)
                                      ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGAGGGATAACAAACAACTCCTTGTCCGGGG‑aaac                                                                                                  >  2:1507668/1‑138 (MQ=255)
                                       tAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGAGGCATAACAAACAAATCCTTGTCCGGAG‑AAccc                                                                                                 >  1:2422808/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACTCCCTGTCCGGAG‑AACCCCaaag                                                                                            >  1:985474/1‑138 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAACGGGGC‑TAACAAAAAACCCCTTTTCCCGGG‑AACCCCaaacggg                                                                                         >  2:1554780/1‑135 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑Cgggg                                                                                        >  2:5800/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCGGAG‑AAACCCAA‑Cgggg                                                                                        >  2:1722491/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑Cgggg                                                                                        >  1:2574956/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑Cgggg                                                                                        >  1:2038073/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAACAACCCCTTGTCCGGGG‑AACCCCCA‑Cgggg                                                                                        >  2:1612113/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAAAAAAAAACTCCTTTTCCGGAG‑GACCCCCA‑Ccggg                                                                                        >  2:214595/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGGCAAAAAAACAAATCCTTTTGCGGAG‑GACCCCaaaaggg                                                                                         >  1:449834/1‑135 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCAA‑Cggggg                                                                                       >  2:1252467/1‑139 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCCCA‑Cggggga                                                                                      >  2:2621065/1‑138 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAACGGGGGCGAAAAAAAAACACCTTGTCAGGAGCAACCCCacagtctc                                                                                        >  2:196753/1‑133 (MQ=255)
                                                  ggCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGgaa                                                                                     >  2:877448/1‑140 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATTAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                  <  2:240897/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGTATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                  <  1:2686543/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                  <  1:1009764/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                  <  1:2169582/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACg                                                                                  <  1:2499674/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTTTCCGGGG‑AACCCCCA‑CGGGGGAAAAGaa                                                                                >  2:1671786/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGGAAAAGaa                                                                                >  2:639791/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGGAAAAGaaa                                                                               >  2:1009764/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCCTGTCCGGAG‑AAACCCAA‑CGGGGGAAACGaaa                                                                               >  1:847751/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGGG‑AACCCCAA‑AGGGGGAAAAGaaa                                                                               >  2:1104785/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGGATAACAAACAACCCCTTGTCCGGAG‑AACCCCAA‑CGGGGGAAAAGaaa                                                                               >  2:335212/1‑140 (MQ=255)
                                                            gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AA‑CCCAA‑CGGGGAAAACGAAATTCaa                                                                          <  1:800286/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCaa                                                                          <  1:697040/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAATGGCATAACAAACAACACCCTTTCCGGGG‑AACCCCAA‑CGGGGGAAAAGAAAATCaa                                                                          >  2:1284264/1‑140 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAAt                                                                         <  1:1554780/140‑1 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAAt                                                                         <  1:1762410/140‑1 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCg                                                                     <  1:770653/140‑1 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCg                                                                     >  2:955835/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCAA‑CAGGGAAAAAGAAATTCAATaact                                                                     >  2:1473098/1‑137 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCATAAAAAAAAAATCCTTGTCCGGGG‑AACCCCCA‑CGGGGGAAACGAAAATCAATAccc                                                                     >  2:2839139/1‑139 (MQ=255)
                                                                        gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTa                                                               <  1:640070/140‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAAt                                                                         <  2:1587479/129‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  1:2871777/140‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAAATCCCTGTCCGGAG‑AACCCCCA‑CCGGGAAAACGAAAATTAAAACCGTCGGGaa                                                              >  2:2644927/1‑140 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGa                                                           >  2:978153/1‑140 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCGCGACAAACAACCCCTTCTCCGGGG‑AAGCCCAA‑CCGGGGGAAAAAAATTCCACACCGCCGGTTATGa                                                           >  2:551710/1‑140 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                       <  2:300305/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaa                                                       <  1:479218/140‑1 (MQ=255)
                                                                                gcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGATAAAAAACAAATCCTTGTCCGGGG‑AAACCCCA‑CGGGGGAAAAGAAAATCAATAACCGCGGGAATGACCaa                                                       >  2:1424024/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:1424024/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGGAAAAGAAATTCAATACCGTCGGTAATGACGaaa                                                      >  1:963503/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCATAACAAACAACCCCTTGTCCGGAG‑AAACCCAA‑CGGGGGAAAAGAAAATCAATAACGTCGGGAATGACGaaa                                                      >  2:776050/1‑140 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGGATAAAAAAAAACACCCTTTCCGGGG‑AAACCCAACCGGGGAAAAAAAAATT‑AATACCGCCGGTAATGACGaaaagg                                                   >  2:1364417/1‑137 (MQ=255)
                                                                                    aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGCATAAAAAACAACTCCTTGTCCGGGG‑GAACCCCA‑CGGGGGAAAAGAAAATCAATACCCTCGGTAATGACGAAAGGc                                                   >  2:989328/1‑140 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCCA‑CGGGGAAAAAGAAAATCAAAACCGTCGGTAATGACGAAAAGCAggg                                               >  2:2483314/1‑139 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  1:1076696/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  2:1780840/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  1:1612113/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  1:321465/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAATGGCATAAAAAAAAACTCCTTTTCCGGAG‑AACCCCCA‑CGGGGGAAAAGAAAATCAATACCGTCGGGAATGAAGAAAAGCAGGGGGGAAg                                         >  2:2455138/1‑140 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGGAAAAGAAAATCAATACCGTCGGTAATGACGAAAAGCAGGTGGGAAg                                         >  2:1904570/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAAAAAAAAAATCCTTGTCCGGAG‑AACCCCAA‑CGGGGGAAACGAAAATCAATAACCTCGGGAATGACGAAAAGCAGGGGAGAAagg                                       >  2:968376/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGCATAACAAAAAACTCCCTGTCCGGAG‑AAACCCAA‑CGGGGGAAAAGAAAATTAATACCGGCGGGAAAGACGAAAGGCAGGGGGGAAggg                                       >  2:229484/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCaa                                    <  1:1147293/140‑1 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCATAAAAAACAACTCCTTTTCCGGAG‑AACCCCCA‑CGGGGAAAACGAAAATCAATAACGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCaa                                    >  2:1166025/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                   <  1:2074912/140‑1 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc                                   >  1:506737/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGGAG‑AACCCCCA‑CGGGGGAAACGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGGAGAAAGGGaaa                                   >  2:2525178/1‑139 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:677240/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:596318/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2328506/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2891981/140‑1 (MQ=255)
                                                                                                       cATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACgag                                <  1:399620/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:33835/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:1904570/140‑1 (MQ=255)
                                                                                                         tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:167431/140‑1 (MQ=255)
                                                                                                          cGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGCTAAAAAACAACTCCCTGTCCGGGG‑AACCCCAA‑CGGGGGAAACGAAAATCAAAACCCTCGGGAATGAAGAAAAGCAGGGGGGAAGGGGAAACAGAcc                             >  2:810286/1‑139 (MQ=255)
                                                                                                           gggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTg                            <  1:925113/140‑1 (MQ=255)
                                                                                                            ggAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGc                           <  1:2621065/140‑1 (MQ=255)
                                                                                                             gAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCa                          <  2:431510/140‑1 (MQ=255)
                                                                                                                    aGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:2483314/140‑1 (MQ=255)
                                                                                                                        tGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGGGG‑AACCCCCA‑CGGGGGAAAAGAAAATCAATACCGTCGGTAATGACGAAAAGCAGGGGAGAAGGGCAACGAGACTGCAAAAGTACTGaa               >  2:375971/1‑140 (MQ=255)
                                                                                                                                 ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  2:343229/140‑1 (MQ=255)
                                                                                                                                      ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa  <  1:2765345/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                           
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568369‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑