BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,769,535	C→A	intergenic (+49/‑168)	yfjQ → / → yfjR	CP4‑57 prophage; protein YfjQ/CP4‑57 prophage; putative DNA‑binding transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,769,535	0	C	A	100.0%	394.2 / NA	110	intergenic (+49/‑168)	yfjQ/yfjR	CP4‑57 prophage; protein YfjQ/CP4‑57 prophage; putative DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (51/59); total (51/59)

Only 100 of 110 total aligned reads displayed.

TCGTGCCGTGCGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATCACATC  >  NC_000913/2769399‑2769667

tCGTGCCGTGCGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCt                                                                                                                                   <  2:893894/140‑1 (MQ=255)

  gtgccgtgcGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTAt                                                                                                                                 <  1:159458/140‑1 (MQ=255)

   tgccgtgcGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTAtg                                                                                                                                <  1:2815189/140‑1 (MQ=255)

   tgccgtgcGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTAtg                                                                                                                                <  2:1061477/140‑1 (MQ=255)

   tgccgtgcGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTACCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTAtg                                                                                                                                >  1:2061136/1‑140 (MQ=255)

    gccgtgcGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTAtgt                                                                                                                               >  1:2316946/1‑140 (MQ=255)

      cgtgcgtgGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGc                                                                                                                             <  1:2774251/140‑1 (MQ=255)

      cgtgcgtgGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGc                                                                                                                             >  2:212374/1‑140 (MQ=255)

        tgcgtgGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTc                                                                                                                           >  1:1130689/1‑140 (MQ=255)

        tgcgtgGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTc                                                                                                                           >  2:2633501/1‑140 (MQ=255)

          cgtgGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCgt                                                                                                                         >  2:2885399/1‑140 (MQ=255)

             ggCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGtgtg                                                                                                                      >  2:502884/1‑140 (MQ=255)

              gCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGc                                                                                                                     <  2:1299028/140‑1 (MQ=255)

                  tGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCa                                                                                                                 <  2:942523/140‑1 (MQ=255)

                    aCGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAAt                                                                                                               <  1:2810323/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  2:1130689/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  1:2239720/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  1:999252/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  2:231119/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  1:1534113/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  2:963221/140‑1 (MQ=255)

                       gggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACCGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccc                                                                                                            <  2:2617847/140‑1 (MQ=255)

                        ggATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATcccc                                                                                                           <  1:2633501/140‑1 (MQ=255)

                         gATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccccc                                                                                                          >  2:1999849/1‑140 (MQ=255)

                         gATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccccc                                                                                                          >  2:349927/1‑140 (MQ=255)

                         gATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccccc                                                                                                          >  1:750838/1‑140 (MQ=255)

                         gATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATccccc                                                                                                          >  1:1165567/1‑140 (MQ=255)

                              gAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTta                                                                                                     <  2:2735340/140‑1 (MQ=255)

                              gAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTta                                                                                                     >  1:362935/1‑140 (MQ=255)

                               aaGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTtat                                                                                                    >  1:1099472/1‑140 (MQ=255)

                               aaGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTtat                                                                                                    <  2:2316946/140‑1 (MQ=255)

                               aaGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTtat                                                                                                    <  2:1099472/140‑1 (MQ=255)

                               aaGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTtat                                                                                                    <  1:2885399/140‑1 (MQ=255)

                                 gCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAg                                                                                                  <  1:1999849/140‑1 (MQ=255)

                                      aCCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCtttt                                                                                             >  2:425442/1‑140 (MQ=255)

                                       ccGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATcc                                                                                                             >  1:1944871/1‑123 (MQ=255)

                                       ccGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATcc                                                                                                             <  2:1944871/123‑1 (MQ=255)

                                         gTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAc                                                                                          <  1:2358270/140‑1 (MQ=255)

                                          tGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAcc                                                                                         <  1:349927/140‑1 (MQ=255)

                                          tGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAcc                                                                                         <  1:425442/140‑1 (MQ=255)

                                          tGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAcc                                                                                         >  1:2328976/1‑140 (MQ=255)

                                          tGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAcc                                                                                         <  2:641088/140‑1 (MQ=255)

                                           gcgcTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTta                                                                                                     <  1:1720364/127‑1 (MQ=255)

                                           gcgcTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTta                                                                                                     >  2:1720364/1‑127 (MQ=255)

                                               tgtgGGTGATGGCAGAAACACTGTTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGt                                                                                    <  1:212374/140‑1 (MQ=255)

                                               tgtgGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGt                                                                                    <  2:362935/140‑1 (MQ=255)

                                                 tgGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTaa                                                                                           >  1:795537/1‑131 (MQ=255)

                                                 tgGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTaa                                                                                           <  2:795537/131‑1 (MQ=255)

                                                 tgGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCACAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTa                                                                                  <  2:1182455/140‑1 (MQ=255)

                                                         ggtaGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGc                                                                          >  2:1928926/4‑140 (MQ=255)

                                                         ggCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGc                                                                          >  1:1051287/1‑140 (MQ=255)

                                                           cAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAAcc                                                                                         >  2:450859/1‑123 (MQ=255)

                                                           cAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCtt                                                                        >  1:23942/1‑140 (MQ=255)

                                                           cAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCtt                                                                        >  1:2193118/1‑140 (MQ=255)

                                                             gAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCtttt                                                                      >  2:2118583/1‑140 (MQ=255)

                                                                    tGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGaaa                                                               >  1:2804646/1‑140 (MQ=255)

                                                                    tGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGC‑CGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAAt                                                              >  1:2788373/1‑140 (MQ=255)

                                                                      cTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATa                                                             >  1:1991161/1‑140 (MQ=255)

                                                                        cACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATaaa                                                           >  2:469180/1‑140 (MQ=255)

                                                                         aCGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGTAGAAATaaaa                                                          >  2:2594233/1‑140 (MQ=255)

                                                                         aCGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATaaaa                                                          >  2:17965/1‑140 (MQ=255)

                                                                            cAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAAt                                                       <  2:2804646/140‑1 (MQ=255)

                                                                              aCTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAg                                                     <  1:1928926/140‑1 (MQ=255)

                                                                                tGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGtt                                                   >  1:2546024/1‑140 (MQ=255)

                                                                                      aGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGTAGAAATAAAAAATAGTTTCTGCg                                             <  1:2594233/140‑1 (MQ=255)

                                                                                      aGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCg                                             <  2:1051287/140‑1 (MQ=255)

                                                                                      aGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCg                                             <  1:2118583/140‑1 (MQ=255)

                                                                                      aGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCg                                             <  1:2586171/140‑1 (MQ=255)

                                                                                      aGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCg                                             <  1:548901/140‑1 (MQ=255)

                                                                                       gACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGt                                            <  1:502884/140‑1 (MQ=255)

                                                                                       gACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGt                                            <  2:2328976/140‑1 (MQ=255)

                                                                                       gACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGt                                            <  2:750838/140‑1 (MQ=255)

                                                                                       gACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCCTTTGCAGAAATAAAAAATAGTTTCTGCGt                                            <  2:1165567/140‑1 (MQ=255)

                                                                                               aTGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATa                                    >  1:2097327/1‑140 (MQ=255)

                                                                                                tGTTACCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATAc                                   <  2:2061136/140‑1 (MQ=255)

                                                                                                  ttGCCACGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATAccc                                 <  1:1604969/140‑1 (MQ=255)

                                                                                                        cGTTGTTAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCg                           <  2:900057/140‑1 (MQ=255)

                                                                                                            gttAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGcccc                       <  1:469180/140‑1 (MQ=255)

                                                                                                             ttAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                      <  2:2097327/140‑1 (MQ=255)

                                                                                                             ttAATATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                      >  2:353070/1‑140 (MQ=255)

                                                                                                               aaTATCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCct                    >  2:11194/1‑140 (MQ=255)

                                                                                                                  atCGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCtt                 >  2:891382/1‑140 (MQ=255)

                                                                                                                    cGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTa               <  2:23942/140‑1 (MQ=255)

                                                                                                                    cGGACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTa               >  2:1427388/1‑140 (MQ=255)

                                                                                                                     ggACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                      >  2:975820/1‑132 (MQ=255)

                                                                                                                     ggACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                      <  1:975820/132‑1 (MQ=255)

                                                                                                                      gACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTaaa             >  1:1858374/1‑140 (MQ=255)

                                                                                                                      gACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTaaa             >  1:359544/1‑140 (MQ=255)

                                                                                                                      gACACCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTaaa             <  1:11194/140‑1 (MQ=255)

                                                                                                                       acacCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCTGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                      >  1:2397658/1‑130 (MQ=255)

                                                                                                                       acacCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                      <  2:2397658/130‑1 (MQ=255)

                                                                                                                       acacCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCctct                  <  1:1364872/134‑1 (MQ=255)

                                                                                                                       acacCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCctct                  >  2:1364872/1‑134 (MQ=255)

                                                                                                                       acacCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAg            >  2:762615/1‑140 (MQ=255)

                                                                                                                       acacCACCTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAg            >  2:2808926/1‑140 (MQ=255)

                                                                                                                          ccaccTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTaa         <  2:1858374/140‑1 (MQ=255)

                                                                                                                           caccTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAAt        <  2:1255212/140‑1 (MQ=255)

                                                                                                                             ccTGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATca      >  2:2337613/1‑140 (MQ=255)

                                                                                                                               tGTCCGCATAGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATcaca    <  1:762615/140‑1 (MQ=255)

                                                                                                                                 tCCGCATAGTTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCGCCGTTACCTCTGGATTTTGCAGAAATAAAAAATAATTTTTGCGTTGTCCATACCCTGTCCCCACCCCTCTTTAAAGCATTCAcatc  >  2:1505940/1‑140 (MQ=255)

TCGTGCCGTGCGTGGCATTGACGGGGATGTGAAGCTTAACCGTGCGCTGTGGGTGATGGCAGAAACACTGCTCACGCAACTGCAGTAGACGTTTCATGTTGCCACGTTGTTAATATCGGACACCACCTGTCCGCATCGCTATGTGCTCGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATCACATC  >  NC_000913/2769399‑2769667

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`