Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	568,802	T→C	I36I (ATT→ATC)	ylcJ →	protein YlcJ

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	568,802	0	T	C	98.9%	330.7 / ‑4.9	90	I36I (ATT→ATC)	ylcJ	protein YlcJ
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (44/45);  total (45/45)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01

TATGGAGGCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATTCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAC  >  NC_000913/568674‑568938                                                                                                                                 |                                                                                                                                         tatGGAGGCTCTTATATTTATATGAGCCTCGTTTTTTGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAAtgt                                                                                                                               <  1:750367/140‑1 (MQ=255) tatGGAGGCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAAtgt                                                                                                                               <  1:2215668/140‑1 (MQ=255) tatGGAGGCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAAtgt                                                                                                                               <  1:1968162/140‑1 (MQ=255)     gAGGCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAAtgt                                                                                                                               <  1:1176669/136‑1 (MQ=255)     gAGGCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAAtgt                                                                                                                               >  2:1176669/1‑136 (MQ=255)        gCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTa                                                                                                                        >  1:1800272/1‑140 (MQ=255)         ctctTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTaa                                                                                                                       >  2:1833616/1‑140 (MQ=255)         ctctTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTaa                                                                                                                       <  2:1800272/140‑1 (MQ=255)           ctTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGGTAATGTGACCTTAAtt                                                                                                                     >  2:1982976/1‑140 (MQ=255)            ttatatttatatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTg                                                                                                                    <  2:2173365/140‑1 (MQ=255)                 tttatatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCttt                                                                                                               <  1:1914802/140‑1 (MQ=255)                    atatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTta                                                                                                            >  2:317143/1‑140 (MQ=255)                    atatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTta                                                                                                            >  2:106690/1‑140 (MQ=255)                    atatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTta                                                                                                            >  1:87823/1‑140 (MQ=255)                    atatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTta                                                                                                            >  1:2146330/1‑140 (MQ=255)                    atatGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTACTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTta                                                                                                            >  1:1172990/1‑140 (MQ=255)                      atGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATTCAAGATAATGTGACCTTAATTGTCTTTTtaaa                                                                                                          >  2:1785772/1‑140 (MQ=255)                          gCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTtaaataaa                                                                                                      >  2:2712788/1‑140 (MQ=255)                          gCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTtaaataaa                                                                                                      >  2:1967857/1‑140 (MQ=255)                           ccTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAATTTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaa                                                                                                     >  2:514084/1‑140 (MQ=255)                           ccTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaa                                                                                                     >  1:148762/1‑140 (MQ=255)                           ccTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaa                                                                                                     >  2:2120519/1‑140 (MQ=255)                           ccTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaa                                                                                                     >  2:1512843/1‑140 (MQ=255)                           ccTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaa                                                                                                     >  1:2125644/1‑140 (MQ=255)                           ccTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaa                                                                                                     >  2:1417813/1‑140 (MQ=255)                            cTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaaa                                                                                                    >  2:1233018/1‑140 (MQ=255)                              cGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaaaat                                                                                                  >  1:191514/1‑140 (MQ=255)                               gTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaaaata                                                                                                 <  2:2146330/140‑1 (MQ=255)                               gTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaaaata                                                                                                 <  2:191514/140‑1 (MQ=255)                                  ttATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAAc                                                                                              <  2:148762/140‑1 (MQ=255)                                   tATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACa                                                                                             <  1:1512843/140‑1 (MQ=255)                                    aTGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACaa                                                                                            >  2:1758630/1‑140 (MQ=255)                                         ttttGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAAtt                                                                                       >  2:1404718/1‑140 (MQ=255)                                          tttGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaaaata                                                                                                 <  1:791851/129‑1 (MQ=255)                                          tttGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTaaataaaaaata                                                                                                 >  2:791851/1‑129 (MQ=255)                                          tttGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATta                                                                                      >  2:1845859/1‑140 (MQ=255)                                          tttGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATta                                                                                      <  2:521561/140‑1 (MQ=255)                                          tttGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATta                                                                                      <  1:505016/140‑1 (MQ=255)                                               tAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATcc                                                                                 <  1:2120519/140‑1 (MQ=255)                                               tAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATcc                                                                                 <  1:1967857/140‑1 (MQ=255)                                                  tGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCccac                                                                              >  1:1898273/1‑140 (MQ=255)                                                      tttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACt                                                                          <  2:857911/140‑1 (MQ=255)                                                      tttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACt                                                                          <  1:1060920/140‑1 (MQ=255)                                                      tttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACt                                                                          <  1:2082604/140‑1 (MQ=255)                                                      tttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACt                                                                          <  1:1382245/140‑1 (MQ=255)                                                      tttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACt                                                                          <  1:2712788/140‑1 (MQ=255)                                                       ttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTa                                                                         <  2:1898273/140‑1 (MQ=255)                                                       ttATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTa                                                                         <  1:413626/140‑1 (MQ=255)                                                          ttttttATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAgg                                                                      <  1:1417813/140‑1 (MQ=255)                                                           tttttATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGt                                                                     <  1:1727954/140‑1 (MQ=255)                                                             tttATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGttt                                                                   >  2:164290/1‑140 (MQ=255)                                                              ttATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTa                                                                         >  1:29434/1‑133 (MQ=255)                                                              ttATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTa                                                                         <  2:29434/133‑1 (MQ=255)                                                              ttATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTta                                                                  >  1:1900495/1‑140 (MQ=255)                                                               tATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTtat                                                                 >  2:2286971/1‑140 (MQ=255)                                                                aTGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTtata                                                                <  2:817832/140‑1 (MQ=255)                                                                      tCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCa                                                          <  2:1900495/140‑1 (MQ=255)                                                                       cTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCAt                                                         <  1:2797392/140‑1 (MQ=255)                                                                       cTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCAt                                                         <  1:1233018/140‑1 (MQ=255)                                                                          ttGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACg                                                      >  1:2520573/1‑140 (MQ=255)                                                                          ttGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACg                                                      <  1:724345/140‑1 (MQ=255)                                                                             tgCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTa                                                   >  2:1500352/1‑140 (MQ=255)                                                                               cTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGGTAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGc                                                 <  1:1982976/140‑1 (MQ=255)                                                                               cTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGc                                                 >  1:2051642/1‑140 (MQ=255)                                                                                  tCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAgg                                              >  1:828856/1‑140 (MQ=255)                                                                                            ggCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATg                                    >  2:749906/1‑140 (MQ=255)                                                                                            ggCGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATg                                    >  1:333219/1‑140 (MQ=255)                                                                                              cGTAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGaa                                  >  2:2378909/1‑140 (MQ=255)                                                                                                tAAGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGaaaa                                <  1:444579/140‑1 (MQ=255)                                                                                                 aaGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGaaaaa                               <  2:2051642/140‑1 (MQ=255)                                                                                                  aGAAAATTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGaaaaaa                              >  2:1496352/1‑140 (MQ=255)                                                                                                    aaaaTTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCGGGTGTCACCATGAAAAAAGc                            <  1:1758630/140‑1 (MQ=255)                                                                                                      aaTTGCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCa                          <  2:333219/140‑1 (MQ=255)                                                                                                          gCAATACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGc                      <  2:2533787/140‑1 (MQ=255)                                                                                                              tACGATTATTGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATGAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCatat                  >  1:1545057/1‑140 (MQ=255)                                                                                                                   ttattGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCg             <  2:315695/140‑1 (MQ=255)                                                                                                                    tattGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGa            <  1:2286971/140‑1 (MQ=255)                                                                                                                     attGTTGTATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGAt           >  2:2479362/1‑140 (MQ=255)                                                                                                                         ttgtATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTNTATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCNATANNATATATNCGATTTtc       <  1:1880024/140‑1 (MQ=255)                                                                                                                           gtATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTtcat     >  2:2820105/1‑140 (MQ=255)                                                                                                                           gtATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTtcat     >  1:584494/1‑140 (MQ=255)                                                                                                                           gtATATCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTtcat     >  2:486668/1‑140 (MQ=255)                                                                                                                            tataTCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGTATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTtcatc    >  1:2009583/1‑140 (MQ=255)                                                                                                                             atatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTtcatca   >  2:1258639/1‑140 (MQ=255)                                                                                                                             atatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTtcatca   >  2:1470147/1‑140 (MQ=255)                                                                                                                              tatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAc  <  1:1461549/140‑1 (MQ=255)                                                                                                                              tatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAc  <  1:486668/140‑1 (MQ=255)                                                                                                                              tatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAc  <  1:2820105/140‑1 (MQ=255)                                                                                                                              tatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAc  <  2:828856/140‑1 (MQ=255)                                                                                                                              tatCCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAc  <  1:1496352/140‑1 (MQ=255)                                                                                                                                 |                                                                                                                                         TATGGAGGCTCTTATATTTATATGAGCCTCGTTTTATGCTTTTTGTTAATGTCTTTATTTTTTATGTATTCTTTTGTGCTTTCAAGATTATGGCGTAAGAAAATTGCAATACGATTATTGTTGTATATTCAAGATAATGTGACCTTAATTGTCTTTTTAAATAAAAAATAAACAAAAATTATATCCCACCACTAAGGTTTATAAAAGCATACGTTAGCAGGTGTCACCATGAAAAAAGCCATAGCATATATGCGATTTTCATCAC  >  NC_000913/568674‑568938

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑