Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,556,2070TC31.8% 102.6 / 21.4 63S215G (AGT→GGT) ‡rtcARNA 3'‑terminal phosphate cyclase
Reads supporting (aligned to +/- strand):  ref base T (41/2);  new base C (0/20);  total (41/22)
Fisher's exact test for biased strand distribution p-value = 1.71e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

CCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTT  >  NC_000913/3556069‑3556346
                                                                                                                                            |                                                                                                                                           
ccTCGGCCCTGACGCGTTTTCCCCCGACGACAAAAAAGCGTTCGGTGATTTTTTCACTTCCGACTTCAAGCGAGACGGTTTTCCCCGGCCCCTGGCCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGAAAAA‑C‑CTc                                                                                                                                            <  2:266266/140‑1 (MQ=255)
    ggCACTGACGCGCTTTTCCCCGACGAAAAAAAGGCGTTCGGTGATTTTTTCCCTTTCGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGTCGCGCGGCGGGTTATGAATTTTCTGTTCATGCAGGAAAAA‑C‑CCCCCCg                                                                                                                                        <  2:148266/140‑1 (MQ=255)
     gCACTGACGCGTTTTTCCCCGACGAAAAAAAAGCGTTCGGTGATTTTTTCATTTTCGACTTCAAGCGAGACGGTATTCCCCGCCCCCTGGTCGCGCGGCAGTTTATAAATTTTTTGTTCATGCAGGAAAAA‑C‑CCCCCCGc                                                                                                                                       <  2:2197203/140‑1 (MQ=255)
     gCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGc                                                                                                                                       >  1:1903805/1‑140 (MQ=255)
     gCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGc                                                                                                                                       >  2:1121310/1‑140 (MQ=255)
       ccTGACGCGTTTTTCCCCGACGAAAAAAAAGCGTTGGGTGATTTTTTCCTTTTCGACTTCAAGCGAGACGGTATTCCCCGGCCCCGGGCCGCGGGGCAGTTTATGAATTTTCTGTTCATGCGGGAAAAA‑C‑CCCCCCGCCa                                                                                                                                     <  2:801583/139‑1 (MQ=255)
           aCGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATTCAGGGAAAA‑A‑CTCCCCGCCAgtgt                                                                                                                                 >  2:714943/1‑140 (MQ=255)
                     cACCGACAAAAAAAAGGGTTTCGGTGATTTTTTCCCTTTCGACTTCAAGCGAGAGGTTATTCCCCGGCCCCGGGTCGCGCGGCAGTTTATAAATTTTCTGTTCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCa                                                                                                                       <  2:1479232/140‑1 (MQ=255)
                         gacgacAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCt                                                                                                                   >  1:2203729/1‑140 (MQ=255)
                            gaaaaaaaaGCGTGGGGTTATTTTTTCCCTTCCGCCTTAAAGCGGGGCGGTATGGCCCGGCCCCGGGTCGCGCGGGTGTTTAGTAATTTTCTTTGCATGCAGGAAAAT‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAg                                                                                                                <  2:2203729/137‑1 (MQ=255)
                                    ggCGTTCGGTTATTTTTCCCCTTTCGACTACAAGCGAGACGTTATTCCCCGCCCCCGGGTCGCGGGGCGGTTTATAAATTTTTTTTTCAGGGAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATgg                                                                                                        <  2:1082411/139‑1 (MQ=255)
                                      gtttggttGATTTTTTCACTTTCGACTTAAGGGGAGAGGTTATTCCCCGCCCCGTGGGCGCGGGGCAGGTTATGAATTTTCTGTTCATGGAGGGAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcg                                                                                                      <  2:2115678/133‑1 (MQ=255)
                                      ggtggggTAATTTTTTCCCTTCCGACTCAAAGGGGGGCGGTATTCCCGGGCCCTGGGGCGCGCGGCAGGTTAGAAATATTCTGTTCAGGGGGGGAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcg                                                                                                      <  2:2432852/135‑1 (MQ=255)
                                      cGTTCGGTTATTTTTTCATTTTCGACTTAAAGCGAGACGGTATTCCCCGGCCCCTGGCCGCGGGGCAGGTTATAAATTTTCTGTTCAGGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcg                                                                                                      <  2:1301228/140‑1 (MQ=255)
                                      cGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGgcg                                                                                                      >  1:1301228/1‑140 (MQ=255)
                                             tGATTTTTTCACTTTCGACTTCAAGCGAGACGGTATTCCCCGCCCCCGGGTCGCGCGGCAGTTTATGAATATTCTGTTCATGAAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGcaca                                                                                               <  2:353616/140‑1 (MQ=255)
                                             cagttttttCATTTGCTCCTTCAGGCGAGACGGTATCCCCCGCCCCCTGTTCGCGGGGCAGGTTAGGAATATTCTGTTCGTG‑AGGGAAAACC‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGcaca                                                                                               <  2:424024/135‑1 (MQ=255)
                                               attttttCACTTTCGCCTTCAAGCGAGAGGGTATTCCCCGGCCCCGGGTCGCGGGGCAGTTTATAAATTTTCTGTTCAGGCGGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACAcc                                                                                             <  2:2398856/137‑1 (MQ=255)
                                                 tttttCCTTTCCGCCTTAAAGCGAGACGTTTTTCCCCGGCCCCTGGTCGCGCGGAAGTTTATAAATTTTTTGTT‑AAGGAGGGAAAA‑ACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAg                                                                                           <  2:1102802/139‑1 (MQ=255)
                                                     tCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTaa                                                                                       >  1:49300/1‑140 (MQ=255)
                                                       aCTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATa                                                                                     >  2:700641/1‑140 (MQ=255)
                                                          ttcaccTTCAAGCGGGACGTTATTCCCGGCCCCCTGGGCGCGCGGCGGTTTATAAATTTTTTGTTCATGAAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGaa                                                                                  <  2:2074169/135‑1 (MQ=255)
                                                           tCGATTTCAGGCGAGACGTTATTCCCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAAc                                                                                 <  2:264292/140‑1 (MQ=255)
                                                           tCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAgctg                                                                                 >  1:424024/1‑137 (MQ=255)
                                                           tCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAAc                                                                                 >  1:563343/1‑140 (MQ=255)
                                                            cGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACt                                                                                >  1:1293079/1‑140 (MQ=255)
                                                                  cAAGCGAGACGTTTTTCCCCGCCCCCGGGCCGCGCGGCAGTTTATGAATTTTTTTTTCATGAAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCa                                                                          <  2:1311005/140‑1 (MQ=255)
                                                                  aaggCGAGGGGGTATTCCCCGGCCCCGGGTCGCGCGGCGGGTTATAAATTTTCTTTTCAGGCGGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCa                                                                          <  2:2370742/137‑1 (MQ=255)
                                                                  aaaGCGAGACGGTTTTCCCGGGCCCCGGGCCGCGCGGCAGGTTATAAATTTTCTGTTCAGGGAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCa                                                                          <  2:1422289/139‑1 (MQ=255)
                                                                    aGCGAGAGGGTATCCCCCGGCCCCTGGTCGCGCGGCAGTTTATAAATATTCTTTTCATG‑AGGGAAAA‑ACCCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACg                                                                        <  2:49300/140‑1 (MQ=255)
                                                                       gagaGGTTATTCCCCGGCCCCGGGTCGCGCGGCGGTTTATAAATATTCTGTTCAGGCAGGAAAAA‑C‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCAt                                                                     <  2:1419999/140‑1 (MQ=255)
                                                                       gagaCGTTATTCCCCGGCCCCTGGTCGCGGGGCAGTTTATAAATTTTTTGTTCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCAt                                                                     <  2:1293079/140‑1 (MQ=255)
                                                                          cagttATTCCCCGGCCCCTGGTCGCGCGGCAGGTTATAAATTTTCTGTTCAGGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTg                                                                  <  2:931079/136‑1 (MQ=255)
                                                                          aCGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTg                                                                  >  1:2082764/1‑140 (MQ=255)
                                                                               aTTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACaa                                                             >  2:1228214/1‑140 (MQ=255)
                                                                                   cccGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGtt                                                         >  1:2246945/1‑140 (MQ=255)
                                                                                      ggCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTccc                                                      >  2:2533102/1‑140 (MQ=255)
                                                                                      ggCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTccc                                                      >  2:478338/1‑140 (MQ=255)
                                                                                        ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTccctg                                                    >  1:931079/1‑138 (MQ=255)
                                                                                        ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                    >  1:905750/1‑140 (MQ=255)
                                                                                        ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                    >  1:1876592/1‑140 (MQ=255)
                                                                                        ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                    >  1:1709971/1‑140 (MQ=255)
                                                                                        ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                    >  2:372130/1‑140 (MQ=255)
                                                                                        ccccTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgc                                                    >  1:632131/1‑140 (MQ=255)
                                                                                         cctgggTCGCGGGGAAGTTTATAAATATTCTGTTCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCcgcg                                                   <  2:2396386/136‑1 (MQ=255)
                                                                                             ggccgcgggGGAGTTTATAAATTTTCTGTTCAGGAAGGAAAAC‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCg                                               <  2:1876592/137‑1 (MQ=255)
                                                                                             ggTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCg                                               >  1:62208/1‑140 (MQ=255)
                                                                                                 gcgcgGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCaa                                           >  1:1335523/1‑140 (MQ=255)
                                                                                                  cgcgGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAg                                          >  2:1486874/1‑140 (MQ=255)
                                                                                                       gaGGTTATAAATTTTCTGTTCAGGAAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                     <  2:748436/139‑1 (MQ=255)
                                                                                                       cAGTTTATAAATTTTCTGTTCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCa                                     <  1:1496431/140‑1 (MQ=255)
                                                                                                         gacagtaaaTTTTCTTTTCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAg                                   <  2:1163525/133‑1 (MQ=255)
                                                                                                               aaaTTTTCTGTTCATGAAGAAAAAA‑C‑CCCCCCGCCAGTATAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTa                             <  2:1037269/139‑1 (MQ=255)
                                                                                                                    ttCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAg                                   >  2:2367780/1‑129 (MQ=255)
                                                                                                                    ttCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAg                                   <  1:2367780/129‑1 (MQ=255)
                                                                                                                    ttCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGa                        >  1:541677/1‑140 (MQ=255)
                                                                                                                    ttCTGTTCATGCAGGGAAAA‑A‑CT‑CCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                       >  2:1979555/1‑140 (MQ=255)
                                                                                                                     tCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                       >  2:2173330/1‑140 (MQ=255)
                                                                                                                     tCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                       >  1:468477/1‑140 (MQ=255)
                                                                                                                     tCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGAt                       >  2:670729/1‑140 (MQ=255)
                                                                                                                       tGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGc                     >  2:1657198/1‑140 (MQ=255)
                                                                                                                        tttCATGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                    <  2:905750/139‑1 (MQ=255)
                                                                                                                        gTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                    >  2:1311240/1‑140 (MQ=255)
                                                                                                                        gTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTATAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGcc                    >  1:1037269/1‑140 (MQ=255)
                                                                                                                         ttCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGactgtc                   >  1:1163525/1‑135 (MQ=255)
                                                                                                                         ttCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                   >  1:1983548/1‑140 (MQ=255)
                                                                                                                         ttCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCACGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                   >  2:1565396/1‑140 (MQ=255)
                                                                                                                         ttCATGAAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                   <  1:2218123/140‑1 (MQ=255)
                                                                                                                         ttCAGGCGGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCa                   <  2:632131/140‑1 (MQ=255)
                                                                                                                          tCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCAc                  >  2:997801/1‑140 (MQ=255)
                                                                                                                          tCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCAc                  >  1:785981/1‑140 (MQ=255)
                                                                                                                             tGCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACggg               <  2:2168618/140‑1 (MQ=255)
                                                                                                                             ggCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACggg               <  2:2415706/139‑1 (MQ=255)
                                                                                                                              gCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGc              >  1:62760/1‑140 (MQ=255)
                                                                                                                              gCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGc              >  1:2415706/1‑140 (MQ=255)
                                                                                                                              gCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGc              >  1:2168618/1‑140 (MQ=255)
                                                                                                                              gCAGGAAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGc              <  2:541677/140‑1 (MQ=255)
                                                                                                                                  ggAAAA‑C‑CCCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCgaga          <  1:1112509/140‑1 (MQ=255)
                                                                                                                                            tCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGtt  <  1:478338/140‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
CCTCGGCACTGACGCGCTTTTCACCGACGACAAAAAAGCGTTCGGTGATATTTTCACTTTCGACTTCAAGCGAGACGGTATTACCCGGCCCCTGGTCGCGCGGCAGGTTATGAATATTCTGTTCATGCAGGGAAAA‑A‑CTCCCCGCCAGTGTAGCGATTTCACGCTCAGCAACATGGCGCGGCACACCAGCTAATAGAACTTCTCCACGCATCTGCACAATGTTCCCGCGCTCGCCAAGTTGCAAGGTGTTAAACGATGCCACGGGCGAGACTTCCGTT  >  NC_000913/3556069‑3556346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑