Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG30.7% 251.9 / 21.5 140T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (35/60);  new base G (42/0);  total (80/60)
Fisher's exact test for biased strand distribution p-value = 3.07e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 150 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643
                                                                                                                                        |                                                                                                                                             
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaa                                                                                                                                           <  2:1316362/140‑1 (MQ=255)
  gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGtgacata                                                                                                                                         >  2:1634843/1‑134 (MQ=255)
  gCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTaaaaaa                                                                                                                                         >  2:1542119/1‑140 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCa                                                                                                                                 >  1:207489/1‑140 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCa                                                                                                                                 <  1:1371084/140‑1 (MQ=255)
           aCATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCAt                                                                                                                                <  2:2474730/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAAAGAGGCGTaacaaa                                                                                                                          >  1:2062451/1‑140 (MQ=255)
                   aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCATaaaaaaaa                                                                                                                        >  2:33146/1‑138 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGAGGCATAacaaaaaaa                                                                                                                      >  2:394869/1‑139 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAacaaacaaa                                                                                                                      >  1:1683628/1‑139 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCGCAAAAACAAGGCAAAAAAaaccac                                                                                                                      >  2:1880750/1‑140 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                   <  1:33146/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGTTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGt                                                                                                               <  1:1359098/140‑1 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGCGGCATAACAAACAACTCCtttt                                                                                                               >  1:2179422/1‑138 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGt                                                                                                               >  1:2394553/1‑140 (MQ=255)
                            aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAAGGCATAAAAAACAAAACCtttt                                                                                                               >  2:591509/1‑138 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                              <  1:876165/140‑1 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                            <  2:17579/140‑1 (MQ=255)
                                 ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGga                                                                                                          <  1:1800216/140‑1 (MQ=255)
                                  cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGga‑g                                                                                                        <  1:1880750/140‑1 (MQ=255)
                                    caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑Gaa                                                                                                      >  1:307885/1‑140 (MQ=255)
                                        aaTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAcccc                                                                                                  >  1:2252824/1‑140 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCATAACAAAAAACTCCTTGTCCGGA‑GAAacccc                                                                                                 >  2:1988701/1‑139 (MQ=255)
                                          tGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCaa                                                                                                >  1:2282950/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACg                                                                                              >  1:1664903/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGCGGCATAACAAAAAACTCCTTGTCCGGA‑GAAACCCCACggg                                                                                            >  1:1409124/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAATGGGATAAAAAAAAAATCCTTGTCCGGA‑GGACCCCAACggg                                                                                            >  2:1201470/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGCGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACggg                                                                                            >  1:1807950/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCGAAAAAACGTGGCATAACAAACAAATCCCTGTCCGGA‑GAACCCCaaacgg                                                                                            >  1:2273192/1‑136 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACgggg                                                                                           >  2:69099/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACgggg                                                                                           >  1:885380/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGA‑GAACCCCAACgggg                                                                                           >  1:1622921/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGACATGGC‑GGGGGAAAAAAAGCGGCGGAACAAACAATCCCCTATCCAGA‑GAAcccccaaaggg                                                                                           >  2:1086493/1‑133 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑a                                                                                         <  1:647911/140‑1 (MQ=255)
                                                cAGGCCGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCCTCGCCATCGCGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCATAACAAACACCTCCTTGTCCGTA‑GACCCCCAACgggta                                                                                          <  2:707684/140‑3 (MQ=255)
                                                  ggCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAACTGGCCTAACAAAAAAACCCCTTTCCGGAGGAACCCCACAGGGG‑aa                                                                                        >  2:1862155/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGATAACAAAAAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑gaaa                                                                                      >  1:456966/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑aaaa                                                                                      >  1:1197721/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAACGGGCTAAAAAACAACACCCTGTTCGGA‑GGAACCCCACGGGG‑gaaa                                                                                      >  2:1741252/1‑140 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACg                                                                                    <  1:591509/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAAATCCTTGTCCGGA‑GAACCCCAACGGGG‑GAAACGaa                                                                                  >  1:711761/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGTAAAAAAAAAGCGGCATAACAAAAAAATCCCTGCTCCCA‑GAACCCCACCAGGG‑caaaaccaa                                                                                 >  2:1547406/1‑135 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGaaa                                                                                 >  1:961936/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGATAACAAAAAACTCCTTGTCCGGG‑GAAACCCAACGGGG‑GAAACGaaa                                                                                 >  2:1675529/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGGGGGATAAAAAACAACCCCTTGTCCCGA‑GGAACCCAAAGGGG‑GAAACGaaa                                                                                 >  2:844368/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGGGGCATAACAAAAAAACCCTTTTCCGGA‑GAACCCCAACGGGG‑GAAAAGaaa                                                                                 >  2:136053/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCaa                                                                            <  2:961936/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAACAAACAACTCCTTGTCCGGA‑GAAACCCCACGGGG‑GAAAAGAAAATCaa                                                                            >  2:1247055/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGAGGCGTAACAAACAACTCCCTGTCCCGA‑GAACCCCAACGGGG‑GAAACGAAAATCaa                                                                            >  2:2425086/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGCAAAAAAACGTGGGACAACAAACAAATGCCTGTACCGA‑GAACCCCAACCGGG‑AAAACCAAATTTaa                                                                            >  1:999986/1‑140 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAAt                                                                           <  1:229591/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATAcc                                                                        <  2:307885/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATAcc                                                                        <  2:1510015/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑GAAACGAAATTCAATAcc                                                                        >  2:2240759/1‑140 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCCACGGGG‑AAAACGAAAATCAATAcc                                                                        >  1:669558/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAATGGCATAAAAAAAAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑GAAAAGAAAATTAATAccc                                                                       >  2:2034938/1‑139 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑GAAACCCCACGGGG‑GAAAAGAAAATCAAAAccc                                                                       >  2:229591/1‑139 (MQ=255)
                                                                       aGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGt                                                                  <  2:517689/140‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTaa                                                                <  1:69099/140‑1 (MQ=255)
                                                                            cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGa                                                             <  1:2289080/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATGAACGCCATCGGGAAAAACCGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:1869922/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:462436/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                        <  1:1743903/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGGGGCATAACAAAAAAATCCCTGTCCGGA‑GGAACCCAACGGGG‑GAAAAGAAAATCAAAACCCTCGGTAATGACGaaa                                                        >  2:23531/1‑140 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                      <  2:2220416/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGGCTAAAAAAAAAATCCCTTTCCCGA‑GAACCCCAACGGGG‑GAAAAGAAAATCAATACCGTCGGGAATGACGaaaag                                                      >  2:1103223/1‑138 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAACAACTCCTTGTCCCGA‑GAAACCCAACGGGG‑GAAACGAAAATCCATACCGTCGGGAATGACGAAAgg                                                      >  2:1795450/1‑140 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCCTAAAAAACAAACCCCTGTTCGGG‑GAACCCCCACGGGGAAAAAAAAAATTCAA‑AACGACGGTAATAAAGaaaag                                                      >  2:964270/1‑138 (MQ=255)
                                                                                          aCAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTga                                               <  2:1817310/140‑1 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑GAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                              >  1:1350762/1‑140 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                             <  1:2240759/140‑1 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCGTAACAAACAAATCCTTTTTCGGA‑GAAACCCCACGGGG‑AAAAAGAAAATAAAAAACGCCGGGGATTACGAAAAGCAGGGGGGAAggg                                         >  2:49663/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGATAAAAAAAAACTCCTTGTCCGGA‑GAACCCCCACGGGG‑GAAACGAAAATCAAAACCCTCGGGAAAGACGAAAAGCAGGGGAGGAggg                                         >  2:188721/1‑140 (MQ=255)
                                                                                                tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAACAAACAACTCCTTGTCCGGG‑GAACCCCAAAGGGG‑GAAAAGAAAATTAATACCGTCGGGAATGACGAAAGGCAGGGGGGAAggg                                         >  2:1056209/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAAAGAAATTCAATACCGTCGGTAATGACGAAAAGGAGGGGAGAAGGGCaa                                      >  2:456715/1‑140 (MQ=255)
                                                                                                   aCGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGCATAACAAAAAAAACCCTTTCCCGA‑GAACCCCCACCGGG‑GAAAAGAAAATCAAAACCGTCGGTGAAGACGAAAAGCAGGGGAGAAAGGGaa                                      >  2:1940886/1‑140 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGATAAAAAAAAAATCCTTTTTCGGG‑GAACCCCAACGGGG‑AAAAAGAAAATTAATAACGTCGGGAATGACGAAAAGGAGGggggaaggggaaa                                     >  2:1290518/1‑139 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:1247055/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:1184540/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:1921465/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                   <  1:1940886/140‑1 (MQ=255)
                                                                                                        aTCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGA‑GAACCCCCACGGGG‑AAAACGAAATTCAATACCGTCGGGAATGACGAAAAGCAGGGGAGAAGGGCAACgaga                                 >  2:1055050/1‑140 (MQ=255)
                                                                                                          cGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGGATAAAAAAAAAACCCTTGTTCGGC‑GAACCCCAACCGGG‑GAAACAAAATTCCATAACCTCCGGAATGACGAAAAGGAGGGGGGAAGGGGAACgagctg                               >  2:2090752/1‑137 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  2:1170249/140‑1 (MQ=255)
                                                                                                              aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                           <  2:1409124/140‑1 (MQ=255)
                                                                                                               aaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaaa                          <  1:1103223/140‑1 (MQ=255)
                                                                                                                    aGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                     <  1:1242002/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt                    <  2:2179422/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGC‑GGGGAAAAAAACGAGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCCACGGGG‑GAAAAGAAAATCAACACCCTCGGGAATTACGAAAAGCAGGGGAGAAGGGGAAAGAGAGTGCAAATGTACt                    >  2:545091/1‑140 (MQ=255)
                                                                                                                      cGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACCCCTTGTTCGGA‑GAACCCCCACGGGG‑GAAACGAAATTCAAAACCGTCGGGAATTACAAAAGGCAGGGGAGAAGGGGAACCAGACTACCAATGTACTg                   >  2:2172122/1‑140 (MQ=255)
                                                                                                                           cggcATGGCGGGGAAAAAAAACGGGGC‑TAAAAAAAAACCCCTTGTCCGGA‑GAACCCCCACGGGG‑GAAAAGAAAATCAAAACCCCCGGGAATGACGCAAAGCAGGGGGGAAGGGCAACGAAACTGCAAATGTACTTAAttt              >  2:691981/1‑140 (MQ=255)
                                                                                                                             gcATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa            <  1:844368/140‑1 (MQ=255)
                                                                                                                             gcATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa            <  1:2186638/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGATGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  2:2123923/140‑1 (MQ=255)
                                                                                                                                 ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa        <  1:2425086/140‑1 (MQ=255)
                                                                                                                                  gC‑GGGGAAAAAAAAGAGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑GAAAAGAAAATCAATACCGTCGGGAATGAAGAAAAGCAGGGGGGAAGGGGAACGAGACTGCAAATGTAATGAAATTCATGTaa       >  2:1639432/1‑140 (MQ=255)
                                                                                                                                   c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCTGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt      <  2:2286099/140‑1 (MQ=255)
                                                                                                                                   c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt      <  2:2394553/140‑1 (MQ=255)
                                                                                                                                   c‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCCGG‑GAACCCCAACGGGG‑GAAAAGAAAATCAATAACGTCGGGAATGACGAAAAGCAGGGGGGAAGGGCAAAGAGACTGCAAATGTACTGAATTTCATGTAAt      >  2:2143847/1‑140 (MQ=255)
                                                                                                                                      ggTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa    <  1:1055050/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                             
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGA‑GAACCCCAACGGGG‑AAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCAAC  >  NC_000913/4568369‑4568643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑