Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,206,4350CT35.0% 121.2 / 73.7 100intergenic (‑179/‑28)ttdR/ttdADNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha
Reads supporting (aligned to +/- strand):  ref base C (3/62);  new base T (35/0);  total (38/62)
Fisher's exact test for biased strand distribution p-value = 7.70e-24
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 113 total aligned reads displayed.

AAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAA  >  NC_000913/3206298‑3206574
                                                                                                                                         |                                                                                                                                              
aaaaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCa                                                                                                                                              <  2:2948566/140‑1 (MQ=255)
  aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGa                                                                                                                                            >  2:464611/1‑140 (MQ=255)
  aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGa                                                                                                                                            >  2:945852/1‑140 (MQ=255)
  aaCATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGa                                                                                                                                            <  2:927595/140‑1 (MQ=255)
    cATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑a                                                                                                                                         <  1:1951581/140‑1 (MQ=255)
       tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAAt                                                                                                                                      <  1:2433130/140‑1 (MQ=255)
       tGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAAt                                                                                                                                      >  1:2027005/1‑140 (MQ=255)
         ccATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATAc                                                                                                                                    <  2:2027005/140‑1 (MQ=255)
              cccTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCATAC‑AAATACaaaaa                                                                                                                               >  2:2641610/1‑140 (MQ=255)
                 tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAATACaaaaa                                                                                                                               >  1:404834/1‑137 (MQ=255)
                 tGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACaaaaa                                                                                                                               <  2:404834/137‑1 (MQ=255)
                   ctctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGa                                                                                                                          <  1:464611/140‑1 (MQ=255)
                    tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑g                                                                                                                        <  2:2170726/140‑1 (MQ=255)
                    tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑g                                                                                                                        <  1:879503/140‑1 (MQ=255)
                    tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑g                                                                                                                        <  1:343325/140‑1 (MQ=255)
                    tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑g                                                                                                                        <  1:3025603/140‑1 (MQ=255)
                    tctGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑g                                                                                                                        <  1:1555124/140‑1 (MQ=255)
                        gcgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAACAAAAAATAGA‑GGTgg                                                                                                                    >  1:1885328/1‑139 (MQ=255)
                         cgcAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGcc                                                                                                                   <  1:1661736/140‑1 (MQ=255)
                             atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCAGAA‑AAAAAAAAAAAAAGGA‑GGTGCCctga                                                                                                               >  2:279320/1‑140 (MQ=255)
                             atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAC‑AAAAAAAAAAAAAGGA‑GTTGGCatga                                                                                                               >  2:879503/1‑140 (MQ=255)
                             atatTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCatga                                                                                                               <  2:2389352/140‑1 (MQ=255)
                                ttcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAATACAAAAACTGGA‑GTTGCCAtgatga                                                                                                            >  1:431175/1‑140 (MQ=255)
                                 tcattcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAg                                                                                                           <  2:1011945/140‑1 (MQ=255)
                                    ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGa                                                                                                        <  1:945852/140‑1 (MQ=255)
                                    ttcTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGa                                                                                                        <  1:2641610/140‑1 (MQ=255)
                                        tATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGAATTTTTCAGAC‑AAAAAAAAAAAAAGGA‑GGTGTCATGATGAGCGgaaaa                                                                                                    >  2:2880902/1‑138 (MQ=255)
                                          ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGtaa                                                                                                  >  1:15941/1‑140 (MQ=255)
                                          ttttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGATGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGtaa                                                                                                  >  1:794379/1‑140 (MQ=255)
                                           tttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGtaat                                                                                                 <  2:3104672/140‑1 (MQ=255)
                                           tttCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGtaat                                                                                                 <  1:1131653/140‑1 (MQ=255)
                                             tCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAA‑AAAAAAAAAAAAAGGA‑GGTGGCATGATGAGGGGAAGgaataa                                                                                               >  2:1624808/1‑140 (MQ=255)
                                                     aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                       <  2:15941/140‑1 (MQ=255)
                                                     aTTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAgg                                                                                       <  1:1422259/140‑1 (MQ=255)
                                                       tCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCa                                                                                     <  2:2371334/140‑1 (MQ=255)
                                                           gAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATAC‑AAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑aa                                                                               <  1:1251717/140‑1 (MQ=255)
                                                            aaCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑aa                                                                               <  1:3039974/140‑1 (MQ=255)
                                                            aaCTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑aa                                                                               <  1:904406/140‑1 (MQ=255)
                                                                gTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAg                                                                           <  1:633166/140‑1 (MQ=255)
                                                                agtAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAg                                                                           <  1:2136140/138‑1 (MQ=255)
                                                                 ttAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAACAAAAAATGGA‑GTTGGCATGATGAGCGGAAGTAATAAACAAAAAGCAGTG‑AATaaat                                                                          >  2:904406/1‑138 (MQ=255)
                                                                     ttACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGAc                                                                      <  1:1258248/140‑1 (MQ=255)
                                                                         atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCGAC‑AAAAACAAAAAATGGG‑GGTGCCATGATGAGCGAAAAAAAAAAGCAAAAAGCAGTG‑AAAAAATTGACagag                                                                  >  2:2038588/1‑140 (MQ=255)
                                                                         atatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAC‑AAAAAAAAAAAATGGA‑GGTGCCATGATGAGGGGAAGAAATAAACAACAAGCAGTG‑AATAAAATGACagag                                                                  >  2:1995612/1‑140 (MQ=255)
                                                                          tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAgaga                                                                 <  1:2269030/140‑1 (MQ=255)
                                                                          tatTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAgaga                                                                 <  1:2479168/140‑1 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAATAAAAAAAATGGA‑GGTGGCATGATGAGCGAAAAGAATAAACAACAAGCAGTG‑AAAAAGTTGACAgagaa                                                                >  2:1258248/1‑139 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAC‑AAAAACAAAAAATGGG‑GGTGGCATGATGAGGGAAAGTAATAAGAAACAAGCAGGG‑AATAAATTGAGAAAGAt                                                                >  2:881064/1‑140 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAC‑AAAAAAAAAAAAATGA‑GGTGGCATGATGAGGGGAAATAAAAAAAAAAAAGCAGGG‑AAAAAGTTTACagagga                                                                >  2:2263207/1‑138 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAC‑AAAAAAAAAAAAAGGG‑GGTGTCATGATGAGGGGAAGAAAAAAAAAAAAAGCAGAG‑AAAAAAATTACAgagaa                                                                >  2:1956372/1‑139 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGAt                                                                <  1:2263207/140‑1 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGAt                                                                <  1:279320/140‑1 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGAt                                                                <  2:431175/140‑1 (MQ=255)
                                                                           atTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAC‑AAAAACAAAAAAAAGA‑GGTGGCATGATGAGCGAAAAAAAAAAAAAACAAGCAGCG‑AATAAAATGACAgagaa                                                                >  2:2141060/1‑139 (MQ=255)
                                                                             tCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTg                                                              <  1:881064/140‑1 (MQ=255)
                                                                                 ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGc                                                          <  1:2038588/140‑1 (MQ=255)
                                                                                 ggTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGc                                                          <  1:2141060/140‑1 (MQ=255)
                                                                                   tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCAGAC‑AAAAACAAAAAAAGGA‑GGTGGCATGATGAGGGGAAGTAAAAAAAAAAAGGCAGTG‑GAAAAAATGACAGAGATTGttggta                                                        >  2:472379/1‑135 (MQ=255)
                                                                                   tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCTGAC‑AAAAAAAAAAAATGGAGGTTGCC‑TGATGAGGGGAAGTAATAAACAAAAAGCAGAG‑AAAAAAATTAAAGAGAATGTTGCTa                                                        >  2:1177626/1‑140 (MQ=255)
                                                                                   tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAACAAAAAATGGA‑GTTGCCATGATGAGCGAAAAGAAAAAACAAAAAGCAGGG‑AATAAGTTGACAGAGATTGTTGCTa                                                        >  2:2479168/1‑140 (MQ=255)
                                                                                   tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAAAAAAAAAAGGA‑GTTGCCATGATGAGCGAAAGAAAAAAGCAACAAGCAGTG‑AAAAAATTGAAAGAAATTGTTGCTa                                                        >  2:1238393/1‑140 (MQ=255)
                                                                                   tGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAC‑AAAAAAAAAAAAAAGA‑GTTGGCAAGATGAGAGAAAATAAAAAACAACAAGCAATG‑AAAAAATTGACAGAGAATGTCGcca                                                        >  2:714299/1‑138 (MQ=255)
                                                                                     gCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAA‑AAAAAAAAAAAATTGA‑GGTGCCATGATGAGCGGAAATAATAAGCAACAAGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAAc                                                      >  2:143879/1‑140 (MQ=255)
                                                                                      cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAC‑AAAAAAAAAAAATGGG‑GGTGGCATGATGAGGGAAAATAAAAAAAAAAAAGCAGGG‑AATAAGTTGAAAGAGATTGTTGCTAACt                                                     >  2:266908/1‑140 (MQ=255)
                                                                                      cAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGCGGAATTTTTCAGACAAAAAAAAAAAAAGGGG‑GTTGCC‑TGGTGGGGGGAAGGAAAAAAAAACAAGGAGTGAAAAAAGTTGA‑AGAGAATGTTGCTaaat                                                     >  2:2407293/1‑138 (MQ=255)
                                                                                          agatatAAACCCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTAc                                                 <  1:1611844/138‑1 (MQ=255)
                                                                                           aaTAAAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTAcc                                                <  1:1177626/140‑1 (MQ=255)
                                                                                               taAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGGATTTTTTCCGAC‑AAAAAAAAAAAATGGG‑GTTGCCATGATGAGCGAAAAAAAAAAACAAAAAGCAGTG‑AATAAATTGAAAGAGATTTTTGCTAAATTTACCGccc                                            >  2:919164/1‑139 (MQ=255)
                                                                                               taAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAAAAAAAAATGGA‑GGTGCCATGATGAGGGAAAGGAATAAACAACAAGCAGTG‑AATAAAATGACAGAGATTGTCGCTAAATTTAACGccc                                            >  2:1154470/1‑139 (MQ=255)
                                                                                               taAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAAATTTTTCAGAC‑AAAAAAAAAAAAAGGA‑GGTGCCCTGATGAGGGAAAAAAAAAAAAAAAAGGCAGTG‑AAAAAATTGACAGAGAATGTCGCTAACTTTatccccc                                            >  2:2966673/1‑134 (MQ=255)
                                                                                               aaaaaCCACATTTTTAGTGGTAGTTTGGGGCGGTGAATTTTTCCAGAA‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCa                                            <  1:1624808/139‑1 (MQ=255)
                                                                                                       caTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCCGAC‑AAAAACAAAAAAAGGG‑GGTGGCATGATGAGCGGAAATAAAAAACAACAAGCAGGG‑GAAAAAATGAAAGAGAATGTCGCTAACTTTACCGCCATGAttttt                                    >  2:23595/1‑138 (MQ=255)
                                                                                                       caTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAACAAAAAATGGA‑GGTGCCATGATGAGCGGAAAGAAAAAACAACAGGCAGAG‑AATAAGTTTACAGAGAATGTCGCTAACTTTACCGCCATGAttttt                                    >  2:2532738/1‑138 (MQ=255)
                                                                                                       caTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAGAC‑AAAAAAAAAAAATGGA‑GTTGCCATGATGAGCGGAAGGAAAAAGCAACAAGCAAAG‑AAAAAATTGACAGAGAATTTCGCTAACTTTATCCCCCTGAttttt                                    >  2:2957360/1‑138 (MQ=255)
                                                                                                       caTTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTTCAAAC‑AAAAAAAAAAAATGGA‑GGTGTCATGGTGAGCGAAAAAAAAAAACAAAAAGCAGGG‑AATAAGTTTGAAGAGATTATCGCTTACATTATCCCCAAGAttttt                                    >  2:1611844/1‑138 (MQ=255)
                                                                                                            ttAGTGTTATTTTGTGGCGGTAAATTTTTCCAGAA‑AAATAAAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGCAAAGGGGAGTG‑AATAAGTTGACAGAGATTGCCGCTAACTTTACCGCCATGATTTCTACCCg                               <  2:1561355/140‑1 (MQ=255)
                                                                                                            ttAGTGGTTTTTTGGGGCGGTGAATTTTTCAAGAA‑AAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACGGGCAGTG‑AATAAGTAAACAGAGAGTGTCGATATCTTTACCGCCATGATTTCTACCCg                               <  2:1783594/140‑1 (MQ=255)
                                                                                                             tAGTGGTAGTTTGTGGCGGTGATTTTTTCCAGAC‑AAATACAAAAACGGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAATTTTACCGCCATGATTTCTACCCGa                              <  1:839539/140‑1 (MQ=255)
                                                                                                             tAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGa                              <  1:1335903/140‑1 (MQ=255)
                                                                                                              aGTGGTAGTTTGTGGCGGTGAATTTTTTTTGAC‑AAAAAAAAAAAATGGG‑GGTGGCCTGATGAGCGAAAATAATAAACAAAAAGCAGTG‑AAAAAATTGACAGAGATTGTCGCTAACTTTATCCCCATGATTTTTACCCCaa                             >  2:839539/1‑140 (MQ=255)
                                                                                                              aGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTTCCGCCATGATTTCTACCCGaa                             <  1:266908/140‑1 (MQ=255)
                                                                                                              aGTGGTAGTTTGGGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGaa                             <  1:2880902/140‑1 (MQ=255)
                                                                                                                tGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTACCTTTACCGCCATGATTTCTACCCGAATg                           <  1:1956372/140‑1 (MQ=255)
                                                                                                                 ggTAGTTTGTGGCGGTGAATTTTTTCCAAC‑AAATAAAAAAAATGGA‑GGTGGCCTGATGAGCGAAAGAAATAAAGAACAGGCAGCG‑AAAAAATTGAGAGAAAATGTTGCTAAATTTTCCCCCCTGATTTTTACCCCAAttc                          >  2:768669/1‑138 (MQ=255)
                                                                                                                  gTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGcc                         <  1:1154470/140‑1 (MQ=255)
                                                                                                                   tAGTTTGTGGCGGTGAATTTTTTTAGGC‑AAAAAAAAAAAATGGG‑GGTGTCATGATGAGGGGAAGTAAAAAAAAAAAAGGAGGG‑AATAAAGTTAAAGAGATTGTTGCTTACTTTTTCCCCCTGATTTTTTCCCCAATGCCt                        >  2:2383385/1‑140 (MQ=255)
                                                                                                                    aGTTTGTGGCGGGGAATTTTTTCTGAC‑AAAAAAAAAAAATGGA‑GGTTGCATGATGAGGGAAAGGAAAAAAAAAAAGGCAGTG‑AATAAGTTGACAGAGAATTTCGCTAACTTTTACCCCCTGAATTTTTCCCGAAAGGCtg                       >  2:1013562/1‑140 (MQ=255)
                                                                                                                       ttGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                    <  1:2957360/140‑1 (MQ=255)
                                                                                                                       ttGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                    <  1:2532738/140‑1 (MQ=255)
                                                                                                                       ttGTGGCGGTGAATTTTTCCAGAC‑AAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCtgatg                    <  1:23595/140‑1 (MQ=255)
                                                                                                                         gtgGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGAc                  <  1:714299/140‑1 (MQ=255)
                                                                                                                           ggCGGTGATTTTTTCCAGAA‑AAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgt                <  1:1238393/140‑1 (MQ=255)
                                                                                                                            gCGGTGAATTTTTCCAGAC‑AAATAAAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg               <  1:2944987/140‑1 (MQ=255)
                                                                                                                            gCGGTGAATTTTCCCAGAA‑AAATAAAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACgtg               <  1:646667/140‑1 (MQ=255)
                                                                                                                             cGGTGAATTTTTTCAGAC‑AAAAACAAAAAATGGA‑GGTGCCATGATGAGGGAAAGGAATAAGAAAAAGGCAGTG‑GATAAGTTGACAGAGAATGTCGCTAACTTTACCGCCATGATTTTTACCCCAATGCCTGATGACgtgg              >  2:2944987/1‑140 (MQ=255)
                                                                                                                             cGGTGAATTTTTTCAGAC‑AAAAAAAAAAAAAGGA‑GGTGCCATGATGAGCGAAAGTAATAAACAAAAAGCAGTG‑AAAAAATTGGAAGAGAATGTCGCTAACTTTTTCGCCCTGATTTTTTCCCCAATGCCtgatgaagggg              >  2:646667/1‑135 (MQ=255)
                                                                                                                               gTGAATTTTTTCAGAC‑AAAAACAAAAAATGGA‑GGTGCCATGATGAGCGGAAATAAAAAACAAAAAGCAGGG‑AATAAATTTACAGAGATTGTCGCTAACTTTTACGCCATGATTTTTTACCGAATGCCTGATGACgtgggg            >  2:1610309/1‑138 (MQ=255)
                                                                                                                                tGAATTTTTTCCGAC‑AAAAACAAAAAATGGG‑GGTGGCATGGTGAGGGGAAGAAATAAACAAAAAGCAGGG‑AATAAATTGTCAGAGATTGTCGCTAAATTTTCCGCCCTGATTTTTTCCCGAATGCCTGATGACGtggtgg           >  2:2037683/1‑140 (MQ=255)
                                                                                                                                 aaaTTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCAAAAGTAATAAGCAACAGGCAGTA‑AATAATTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGa          <  1:2037683/139‑1 (MQ=255)
                                                                                                                                         ccAGAA‑AAAAACAAAACCGGGA‑GTTCCCATGATGCCAAAAGGTAATAAGCAACCGGTTGTG‑AAGAAGTAGACAGGGATTGTCCTTACCTTAACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTaa  <  2:1409080/140‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                              
AAAACATTGCCATTCCCTGCTCTGGCGCAATATTCATTCTTATTTTCGCGTTGATTCACGAACTGTTAATTACATATTCACGGTGGCAAAAAATATAAAACCACATTTTTAGTGGTAGTTTGTGGCGGTGAATTTTTCCAGAC‑AAATACAAAAACTGGA‑GTTGCCATGATGAGCGAAAGTAATAAGCAACAGGCAGTG‑AATAAGTTGACAGAGATTGTCGCTAACTTTACCGCCATGATTTCTACCCGAATGCCTGATGACGTGGTGGATAAACTAA  >  NC_000913/3206298‑3206574

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑