Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG25.9% 388.6 / 24.6 176T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (40/89);  new base G (45/0);  total (87/89)
Fisher's exact test for biased strand distribution p-value = 2.67e-18
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 180 total aligned reads displayed.

CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568366‑4568641
                                                                                                                                           |                                                                                                                                           
cagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTa                                                                                                                                            >  2:1089031/1‑140 (MQ=255)
   gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaa                                                                                                                                         >  1:1044598/1‑140 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTg                                                                                                                                  >  1:485610/1‑140 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaaaagag                                                                                                                                  >  2:1008337/1‑136 (MQ=255)
          aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGaaaaaaaacca                                                                                                                                  >  2:2013581/1‑136 (MQ=255)
             gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCa                                                                                                                               <  2:1609328/140‑1 (MQ=255)
             gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTgggc                                                                                                                               >  2:1485470/1‑138 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATa                                                                                                                             >  2:1074112/1‑140 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATa                                                                                                                             >  1:2560300/1‑140 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCa                                                                                                                               >  1:754865/1‑138 (MQ=255)
               cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCATa                                                                                                                             >  2:1533401/1‑140 (MQ=255)
                   ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAACTGGCATaaaaa                                                                                                                         >  2:978209/1‑140 (MQ=255)
                   ggCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAAGGGCATaacaa                                                                                                                         >  2:1736658/1‑140 (MQ=255)
                    gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaacaaa                                                                                                                        >  1:371489/1‑140 (MQ=255)
                     cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATaacaaac                                                                                                                       <  1:1302188/140‑1 (MQ=255)
                          aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTc                                                                                                                  <  1:2037305/140‑1 (MQ=255)
                           aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  1:444747/140‑1 (MQ=255)
                           aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  2:485610/140‑1 (MQ=255)
                           aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  1:1404372/140‑1 (MQ=255)
                           aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGAGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                                 <  2:1700405/140‑1 (MQ=255)
                               aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGt                                                                                                             <  2:2956053/140‑1 (MQ=255)
                               aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGt                                                                                                             >  2:127296/1‑140 (MQ=255)
                               aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGt                                                                                                             >  2:1302188/1‑140 (MQ=255)
                               aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAACAAACAAcccccttt                                                                                                             >  1:722960/1‑136 (MQ=255)
                               aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCATAAAAAACAAAACCtttt                                                                                                             >  2:2037305/1‑138 (MQ=255)
                                cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                            <  1:2614803/140‑1 (MQ=255)
                                    ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGga                                                                                                        <  2:2441335/140‑1 (MQ=255)
                                      acaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAAAAAAAAACTCCTTTTcccgggg                                                                                                      >  2:444747/1‑135 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACAGGGCATAACAAACAAATCCTTGTCCGGAG‑aa                                                                                                    >  2:2868175/1‑140 (MQ=255)
                                       caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAATGGCATAAAAAAAAACTCCTTTTTCGgagga                                                                                                     >  2:2681680/1‑138 (MQ=255)
                                        aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AAc                                                                                                   <  1:1425245/140‑1 (MQ=255)
                                             cgATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑aa                                                                                             <  1:1921408/139‑1 (MQ=255)
                                                 cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCCGGAG‑AACCCC‑AACggg                                                                                         >  2:2672085/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCTTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑GAACCC‑CACgggg                                                                                        >  2:2103937/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGTGGCATAAAAAACAAATCCTTTTCCGGAG‑AACCCC‑AACgggg                                                                                        >  1:2031373/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACgggg                                                                                        >  2:1824298/1‑140 (MQ=255)
                                                  ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGGCTAAAAAAAAAATCCTTTTTCGGCG‑GACCCC‑CACgggg                                                                                        >  2:2028350/1‑140 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGaaaa                                                                                    >  1:1651841/1‑140 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGaaaa                                                                                    <  1:3136052/140‑1 (MQ=255)
                                                      gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAAAAAAAAAATCCTTGTCCGGGGAAACCCC‑AACGGGGaaa                                                                                     >  2:30068/1‑140 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  1:546569/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  2:1588348/140‑1 (MQ=255)
                                                        tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  1:2681680/140‑1 (MQ=255)
                                                         ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  2:1555750/140‑1 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGGAAACGaa                                                                                >  1:3044226/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCGTAACAAAAAACTCCTTGTCCGGAG‑GACCCC‑AACGGGGGAAACGaa                                                                                >  1:1442646/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCGTAACAAACAACCCCTTGTCCGGGG‑AACCCC‑AACGGGGGAAACGaa                                                                                >  2:1811111/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGAG‑AACCCC‑AACGGGGGAAAAGaa                                                                                >  1:1084495/1‑140 (MQ=255)
                                                          gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGAG‑AAACCC‑AACGGGGGAAACGaa                                                                                >  1:956391/1‑140 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGATAAAAAAAAAATCCTTTTCCGGGG‑AACCCC‑AACGGGGgaaaaacct                                                                               >  2:1394068/1‑135 (MQ=255)
                                                           aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGGGGCCTAAAAAAAAACCCCTTGTCCGGAG‑AACCCCAAACGGGGaaaagaaa                                                                                >  1:2876860/1‑136 (MQ=255)
                                                               gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCa                                                                           <  1:2013581/140‑1 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCaa                                                                          <  1:2914303/140‑1 (MQ=255)
                                                                aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCaa                                                                          >  1:1608256/1‑140 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  <  2:926209/127‑1 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCg                                                                     >  1:420447/1‑140 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACg                                                                                  >  1:926209/1‑127 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACGGGGCATAACAAAAAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAAAGAAAATCAATaacc                                                                     >  2:2081764/1‑137 (MQ=255)
                                                                     tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGGAG‑AAACCC‑CACGGGGGAAACCAAATTCAATACCg                                                                     >  2:988213/1‑140 (MQ=255)
                                                                      cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCAGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGt                                                                    <  1:1008337/140‑1 (MQ=255)
                                                                       gACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTc                                                                   <  2:371489/140‑1 (MQ=255)
                                                                         cAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAAAAACTCCTTTTCCGGAG‑AACCCC‑AACGGGGAAAACGAAAATCAATAcccccgg                                                                 >  2:2239488/1‑135 (MQ=255)
                                                                            aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTaa                                                              <  2:343097/140‑1 (MQ=255)
                                                                            aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAACAAATCCTTTTCCGGAG‑AACCCC‑CACGGGGGAAAAGAAAATCAATACCGTCGGGaa                                                              >  2:2325577/1‑140 (MQ=255)
                                                                               cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAACTGGGATAACAAACAAATCCTTGTCCGGAG‑AAACCC‑AACGGGGGAAAAGAAATTTAATAACGTCGGGAAtaa                                                           >  2:534429/1‑138 (MQ=255)
                                                                                    caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa                                                      <  1:2867650/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:2376555/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:2325577/140‑1 (MQ=255)
                                                                                      aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg                                                    <  1:2083544/140‑1 (MQ=255)
                                                                                            tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAAAAAACAACACCTTTTTCGGAG‑AACCCC‑CACGGGGGAAAAGAAAATCAATACCGTCGGTAAAGACGAAAAGCAgggg                                              >  2:1485493/1‑138 (MQ=255)
                                                                                            tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAACTGGGATAAAAAAAAAAACCTTTTCCGGGG‑AAACCC‑CACGGGGGAAAAGAAAATCAATACCGTCGGGAATGAAGAAAaggagggg                                              >  2:3171909/1‑138 (MQ=255)
                                                                                            tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑CGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTg                                              >  1:2930717/1‑140 (MQ=255)
                                                                                              cagaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  1:2774971/137‑1 (MQ=255)
                                                                                              cAAAAGCAACGGCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACACCTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgag                                            <  1:978716/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:3171909/140‑1 (MQ=255)
                                                                                               aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga                                           <  1:2979633/140‑1 (MQ=255)
                                                                                                 aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg                                         <  1:2489431/140‑1 (MQ=255)
                                                                                                 aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCTGAG‑AACCCC‑CACGGGGGAAACGAAAATCAATACCCTCGGGAATGACGAAAAGCAGGGGAGAAg                                         >  2:2489431/1‑140 (MQ=255)
                                                                                                 aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGGATAAAAAACAACTCCTTGTCCGGAG‑AAACCC‑AACGGGGGAAAAGAAAATCAATAACGTCGGGAAAGACGAAAAGCAGGGGGGAAg                                         >  2:3092161/1‑140 (MQ=255)
                                                                                                  aTCAACGCCATCGGGAAAAACAGCGTGGCGGCATAGC‑GGATTAAAAAAAGTGGCAGAAAAAACAACTCCTTCTCCGGAG‑AAACCC‑AAACGGGAAAACAAAAAACAAAACCGTCGGTAATGGCTAAAAGCagaagagaagt                                        >  2:743187/1‑139 (MQ=255)
                                                                                                   tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAAGGGCCTAACAAACAAATCCTTTTCCGGAA‑GACCCC‑CACGGGGGAAAACAAATTCAATAACCTCCGGCATGAAGAAAAGGAGGGgaggaagg                                       >  2:2393919/1‑135 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  2:2560300/140‑1 (MQ=255)
                                                                                                         ccATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACga                                 <  1:2672085/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc                              <  1:2393919/140‑1 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCGGAG‑AACCCC‑AACGGGGAAAAAGAAAATTAATACCGTCGGGAATGAAGAAAAGCAGGGGAGAAGGGCAAAgagaa                              >  2:2988709/1‑139 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAACATGGCATAAAAAAAAACTCCCTGTCCGGGG‑AACCCC‑AACGGGGGAAACGAAAATTAAAAACGCCGGTGAAGAAGGAAAGGAGGGGAGAAGGGGAACgacag                              >  2:2774971/1‑137 (MQ=255)
                                                                                                            tCGGGAAAAACAGCGTGGCGGCATGGC‑GGGGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCCGAG‑AACCCC‑AACCGGGGAAACGAAATTCAAAACCGTCGGGAATTACGAAAAGCAGGGGGGGAGGGGAACgagaa                              >  2:111698/1‑139 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  2:3075545/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  1:2239488/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         <  1:1649191/140‑1 (MQ=255)
                                                                                                                 aaaaaCAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGACAACGAGACTGCaa                         <  1:1816525/140‑1 (MQ=255)
                                                                                                                       aGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc                   <  1:1170141/140‑1 (MQ=255)
                                                                                                                          gTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa                         >  2:1635780/1‑131 (MQ=255)
                                                                                                                          gTGGCGGCATGGC‑GGGTAAAAAAACGGGGCGTAACAAACAAATCCTTGTCCCGGG‑AACCCC‑AACGGGGGAAAACAAAATCAATAACGTCGGTAATGACCAAAGGCAGGGGGGAAGGGCAAACAGAACGCAAATATACTGa                >  2:1649191/1‑140 (MQ=255)
                                                                                                                                gcATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCa          <  2:722960/140‑1 (MQ=255)
                                                                                                                                   tGGC‑GGGTAAAAAAAAGTGGGATAACAAACAAATCCTTGTCCGGGG‑AAACCC‑AACGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACGAAAGGCAGGGGGGAAGGGGAACGAGACTGCAAATGTACTGAATTTTATGt       >  2:1761064/1‑140 (MQ=255)
                                                                                                                                    ggC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa      <  1:1538274/140‑1 (MQ=255)
                                                                                                                                     gC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTaa     <  1:507874/140‑1 (MQ=255)
                                                                                                                                      c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  2:1608256/140‑1 (MQ=255)
                                                                                                                                      c‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAAt    <  1:3092161/140‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                           
CAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGC‑GGGTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGGAG‑AACCCC‑AACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA  >  NC_000913/4568366‑4568641

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑