BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,122,117	G→T	P164H (CCT→CAT)	pyrC ←	dihydroorotase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,122,117	0	G	T	100.0%	698.4 / NA	193	P164H (CCT→CAT)	pyrC	dihydroorotase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (89/104); total (89/104)

Only 100 of 196 total aligned reads displayed.

GGTTGCGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGAGGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTCAA  >  NC_000913/1121980‑1122249

     cGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGtt                                                                                                                                   <  2:1212320/136‑1 (MQ=255)

     cGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCAt                                                                                                                               >  2:1819240/1‑140 (MQ=255)

     cGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCAt                                                                                                                               >  1:2240053/1‑140 (MQ=255)

     cGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCAt                                                                                                                               >  1:2848816/1‑140 (MQ=255)

     cGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCAt                                                                                                                               >  2:36309/1‑140 (MQ=255)

      ggTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATc                                                                                                                              <  2:1271350/140‑1 (MQ=255)

        ttAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCAc                                                                                                                            >  2:902759/1‑140 (MQ=255)

        ttAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCAc                                                                                                                            <  2:2861575/140‑1 (MQ=255)

         tAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACg                                                                                                                           <  2:3439592/140‑1 (MQ=255)

          aaaCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCAc                                                                                                                            <  2:472466/138‑1 (MQ=255)

          aaaCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGc                                                                                                                          <  1:3009622/140‑1 (MQ=255)

          aaaCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGc                                                                                                                          <  1:232868/140‑1 (MQ=255)

          aaaCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGc                                                                                                                          >  2:680194/1‑140 (MQ=255)

          aaaCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGc                                                                                                                          <  2:1318769/140‑1 (MQ=255)

          aaaCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGc                                                                                                                          <  1:1476030/140‑1 (MQ=255)

            aCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCtt                                                                                                                        <  2:200115/140‑1 (MQ=255)

            aCATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCtt                                                                                                                        <  2:2804485/140‑1 (MQ=255)

                 aGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCtt                                                                                                                        >  2:2262963/1‑135 (MQ=255)

                 aGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCtat                                                                                                                   >  1:2113514/1‑140 (MQ=255)

                  gATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCtata                                                                                                                  >  2:3095876/1‑140 (MQ=255)

                      ctgcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgc                                                                                                              >  1:1094501/1‑140 (MQ=255)

                      ctgcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgc                                                                                                              >  1:1233280/1‑140 (MQ=255)

                       tgcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCa                                                                                                                             <  2:1664551/124‑1 (MQ=255)

                       tgcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgcg                                                                                                             >  1:2830381/1‑140 (MQ=255)

                       tgcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgcg                                                                                                             <  1:1847034/140‑1 (MQ=255)

                       tgcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgcg                                                                                                             >  1:166089/1‑140 (MQ=255)

                        gcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCt                                                                                                                         <  2:1779004/127‑1 (MQ=255)

                        gcGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgcgc                                                                                                            >  2:1917236/1‑140 (MQ=255)

                             gTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTc                                                                                                       <  1:514209/140‑1 (MQ=255)

                             gTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTc                                                                                                       <  1:2851043/140‑1 (MQ=255)

                                aTGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACg                                                                                                    >  1:2586531/1‑140 (MQ=255)

                                aTGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACg                                                                                                    >  2:1427900/1‑140 (MQ=255)

                                   gtggCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAg                                                                                                               <  2:3562254/126‑1 (MQ=255)

                                   gtggCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAg                                                                                                               >  1:3562254/1‑126 (MQ=255)

                                       cagccagcCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCaaaa                                                                                             <  2:2201240/140‑1 (MQ=255)

                                        agccagccGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCaaaaa                                                                                            >  2:1732482/1‑140 (MQ=255)

                                        agccagccGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCaaaaa                                                                                            >  1:1018520/1‑140 (MQ=255)

                                        agccagccGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCaaaa                                                                                             <  2:2917819/139‑1 (MQ=255)

                                           cagccGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCaaaa                                                                                             <  2:297827/136‑1 (MQ=255)

                                             gccGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCg                                                                                       <  1:36309/140‑1 (MQ=255)

                                              ccGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTc                                                                                        >  1:421163/1‑138 (MQ=255)

                                               cGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGat                                                                                     <  2:1046987/140‑1 (MQ=255)

                                                 ttCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGatat                                                                                   <  1:3095876/140‑1 (MQ=255)

                                                     tttCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGc                                                                               <  2:1153761/140‑1 (MQ=255)

                                                        ccGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCAtg                                                                            <  1:1732482/140‑1 (MQ=255)

                                                        ccGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCAtg                                                                            >  1:157175/1‑140 (MQ=255)

                                                           tCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATgtgt                                                                         <  1:700476/140‑1 (MQ=255)

                                                               ggACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACt                                                                     <  2:2741570/140‑1 (MQ=255)

                                                                gACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACtt                                                                    <  2:966616/140‑1 (MQ=255)

                                                                gACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACtt                                                                    >  1:1053588/1‑140 (MQ=255)

                                                                gACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACtt                                                                    <  2:1053588/140‑1 (MQ=255)

                                                                gACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACtt                                                                    <  2:1094501/140‑1 (MQ=255)

                                                                   aTAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCAc                                                                 <  1:1656039/140‑1 (MQ=255)

                                                                     aGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCAtg                                                                            >  2:351286/1‑127 (MQ=255)

                                                                     aGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCa                                                               <  2:316080/140‑1 (MQ=255)

                                                                       tCGGCAGCATCTTTGGTGGTGATGTGTTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCAtg                                                                            <  1:1510045/125‑1 (MQ=255)

                                                                         ggCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgcg                                                                                                             <  2:538460/90‑1 (MQ=255)

                                                                         ggCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAgcg                                                                                                             >  1:538460/1‑90 (MQ=255)

                                                                         ggCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCa                                                           >  2:625055/1‑140 (MQ=255)

                                                                         ggCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCa                                                           >  2:3373819/1‑140 (MQ=255)

                                                                          gcagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAc                                                          <  1:2753866/140‑1 (MQ=255)

                                                                          gcagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAc                                                          <  1:1740849/140‑1 (MQ=255)

                                                                          gcagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAc                                                          <  1:3325148/140‑1 (MQ=255)

                                                                          gcagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAc                                                          >  1:1388573/1‑140 (MQ=255)

                                                                          gcagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAc                                                          >  1:657855/1‑140 (MQ=255)

                                                                           cagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAcc                                                         >  1:2960641/1‑140 (MQ=255)

                                                                           cagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAcc                                                         >  1:2936250/1‑140 (MQ=255)

                                                                           cagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAcc                                                         >  1:3363935/1‑140 (MQ=255)

                                                                           cagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAcc                                                         >  1:3482267/1‑140 (MQ=255)

                                                                           cagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAcc                                                         >  1:1007591/1‑140 (MQ=255)

                                                                           cagcaTCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCAc                                                          <  2:1532093/139‑1 (MQ=255)

                                                                                acTTTGGTGGTGATGTGCTCAAAGACGGCAGGCAGCGCAGTCAGTCGCCGGCGTGGATGTAACATCCCGATTTCTATAATGCGCTCTTCACGATCAAAAAGGTCGATATCTGCATGTGTCGCTTCACCTTGAAACAGTAg                                                    <  2:392733/139‑1 (MQ=255)

                                                                                       tggttATGTGCTCAAAACCGACTTTCAGCGCTGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAGGCGCGCTTCACGATAAAAAATGTGGATATCTGCATGTGTCACTTCTCCATGCACCAGTAGCGGCAtc                                             <  2:3482267/140‑2 (MQ=255)

                                                                                       tggtgATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATa                                             <  2:1007591/140‑1 (MQ=255)

                                                                                        ggtgATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATAc                                            <  1:625055/140‑1 (MQ=255)

                                                                                         gtgATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATAcc                                           <  1:902759/140‑1 (MQ=255)

                                                                                          tgATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCg                                          >  2:3311313/1‑140 (MQ=255)

                                                                                                 cTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGAtttttt                                   >  2:2393651/1‑140 (MQ=255)

                                                                                                   cAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTcc                                 >  2:1877560/1‑140 (MQ=255)

                                                                                                    aaaaaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCa                                >  1:2528057/1‑140 (MQ=255)

                                                                                                      aaaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATg                              <  2:2830393/140‑1 (MQ=255)

                                                                                                      aaaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATg                              <  1:1877560/140‑1 (MQ=255)

                                                                                                      aaaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATg                              <  1:3390138/140‑1 (MQ=255)

                                                                                                       aaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCAttc                             <  2:2830381/140‑3 (MQ=255)

                                                                                                       aaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATgc                             <  1:3475737/140‑1 (MQ=255)

                                                                                                       aaCGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATgc                             <  2:372754/140‑1 (MQ=255)

                                                                                                         cGACTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATgcgc                           >  2:2136749/1‑140 (MQ=255)

                                                                                                           aCTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCa                                >  1:973026/1‑133 (MQ=255)

                                                                                                           aCTTTCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCa                                <  2:740092/133‑1 (MQ=255)

                                                                                                               tCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGt                     <  2:855279/140‑1 (MQ=255)

                                                                                                               tCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGt                     <  2:157175/140‑1 (MQ=255)

                                                                                                               tCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGt                     <  2:2528057/140‑1 (MQ=255)

                                                                                                               tCAGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCACGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGt                     <  2:521289/140‑1 (MQ=255)

                                                                                                                 aGCGCAGTCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTAc                   <  1:1427900/140‑1 (MQ=255)

                                                                                                                        tCAGGCGCTGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATg            >  1:3017796/1‑140 (MQ=255)

                                                                                                                                tGGCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTc    >  1:1535903/1‑140 (MQ=255)

                                                                                                                                 ggCGCAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTCa   >  1:1791176/1‑140 (MQ=255)

                                                                                                                                  gcgcAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTCaa  >  2:1594377/1‑140 (MQ=255)

                                                                                                                                  gcgcAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTCaa  >  1:3267556/1‑140 (MQ=255)

                                                                                                                                  gcgcAGATGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTCaa  >  1:787534/1‑140 (MQ=255)

GGTTGCGGTTAAACATCAGATGCTGCGGAGTGATGGTGGCAGCCAGCCGTTCATTTCCGTCACGGACATAGTCGGCAGCATCTTTGGTGGTGATGTGCTCAAAAACGACTTTCAGCGCAGTCAGGCGCTGGCGCAGAGGTTCCATCACGCTTTCTATAAAGCGCGCTTCACGATCAAAAATGTCGATATCTGCATGTGTCACTTCACCATGCACCAGTAGCGGCATACCGATTTTTTCCATGCGCTCAAGTACCGGCATGATTGCGTCAA  >  NC_000913/1121980‑1122249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`