New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 375100	NA (NA)	14 (0.290)	12/238	2.4	NA	noncoding (19/36 nt)	other	REP31d
	?	NC_000913	= 377352	NA (NA)					noncoding (17/37 nt)	other	REP32a

GAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/374973‑375100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagacgcgCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCG  <  NC_000913/377352‑377238                                                                                                                                                                                                                                                     GAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAAGCGTCGCA                                                                                                         >  2:924178/1‑140                                   CGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCA                                                                      >  1:322572/1‑140                                   CGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCA                                                                      >  1:356782/1‑140                                                      CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCAC                                                                     >  1:126323/1‑122                                                      CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCAC                                                                     <  2:126323/122‑1                                                       GACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTT                                                  >  1:641590/1‑140                                                              GGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTC                                           <  2:374968/140‑1                                                                                TTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTT                          >  2:296511/1‑140                                                                                TTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTT                          >  2:342492/1‑140                                                                                  ATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCA                        >  1:503228/1‑140                                                                                         CTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCT                 <  1:342492/140‑1                                                                                             GGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTC             >  2:779268/1‑140                                                                                                      GGGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGC   >  2:487119/1‑140                                                                                                       GGAATTTGTAGGCCTGATAAGACGCG‑TTAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCG  >  1:765519/1‑140                                                                                                                                                                                                                                                     GAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/374973‑375100 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggcctgataagacgcgCATAGCGTCGCATCAGGCATCTGCGCACGACTTATCTATGTTTACCACATCAAATCATCAGGCACTTTGAAGTCGGCATACGGGTCGTCTTCATCCTGCTCTTCGGCGCTGAGCG  <  NC_000913/377352‑377238

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.