Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,804,242	T→G	pseudogene (1149/1900 nt)	arpB →	putative ankyrin repeat protein B, N‑terminal fragment

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,804,242	0	T	G	100.0%	180.5 / NA	50	pseudogene (1149/1900 nt)	arpB	putative ankyrin repeat protein B, N‑terminal fragment
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base G (29/21);  total (29/21)

GGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAG  >  NC_000913/1804105‑1804373                                                                                                                                          |                                                                                                                                    gggAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGcc                                                                                                                                   >  1:598408/1‑140 (MQ=255)  ggAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGccc                                                                                                                                  >  1:372299/1‑140 (MQ=255)       tCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGaaa                                                                                                                             >  1:890427/1‑140 (MQ=255)          aGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAg                                                                                                                          >  2:918858/1‑140 (MQ=255)                tATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCa                                                                                                                    <  1:888790/140‑1 (MQ=255)                  ttttCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCAtt                                                                                                                  <  2:78315/140‑1 (MQ=255)                  ttttCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCAtt                                                                                                                  <  2:744807/140‑1 (MQ=255)                    ttCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGa                                                                                                                <  1:341879/140‑1 (MQ=255)                        cgGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAaata                                                                                                            >  2:527608/1‑140 (MQ=255)                         gggTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAaataa                                                                                                           >  2:445568/1‑140 (MQ=255)                                gCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTgc                                                                                                    <  2:890427/140‑1 (MQ=255)                                 cATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTgcg                                                                                                   <  1:228990/140‑1 (MQ=255)                                 cATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTgcg                                                                                                   <  1:527608/140‑1 (MQ=255)                                 cATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTgcg                                                                                                   <  1:527859/140‑1 (MQ=255)                                      cGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGaa                                                                                              >  2:22719/1‑140 (MQ=255)                                         aTGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAg                                                                                           <  1:769687/140‑1 (MQ=255)                                                 tGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTa                                                                                   >  2:846975/1‑140 (MQ=255)                                                   ccccTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTaca                                                                                 <  1:22719/140‑1 (MQ=255)                                                                atcGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACAACTGCTTTAtttt                                                                    >  1:951197/1‑140 (MQ=255)                                                                 tcGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTAttttt                                                                   >  1:434297/1‑140 (MQ=255)                                                                        tgttgtTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatg                                                            >  2:925638/1‑140 (MQ=255)                                                                        tgttgtTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatg                                                            >  1:118531/1‑140 (MQ=255)                                                                          ttgttAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTatgat                                                          >  2:610233/1‑140 (MQ=255)                                                                             ttAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGaa                                                       >  2:681393/1‑140 (MQ=255)                                                                               aataatGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCAATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACg                                                     <  1:913138/140‑1 (MQ=255)                                                                                   atGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACa                                                 <  1:766063/140‑1 (MQ=255)                                                                                    tGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACAt                                                >  2:849491/1‑140 (MQ=255)                                                                                       ccaCAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACt                                             >  2:444063/3‑140 (MQ=255)                                                                                           aGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACa                                         <  2:544991/140‑1 (MQ=255)                                                                                                  tctcAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGaa                                  >  2:110299/1‑140 (MQ=255)                                                                                                     cAACAGCTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAat                               >  1:578577/1‑140 (MQ=255)                                                                                                           cTTATTACATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTAt                         >  1:484956/1‑140 (MQ=255)                                                                                                              attaCATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCa                      >  2:518010/1‑140 (MQ=255)                                                                                                                taCATTATTCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAg                    >  1:928723/1‑140 (MQ=255)                                                                                                                       ttCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCa             >  2:689701/1‑140 (MQ=255)                                                                                                                        tCAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAg            >  2:234567/1‑140 (MQ=255)                                                                                                                         cAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGt           <  2:928723/140‑1 (MQ=255)                                                                                                                         cAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGt           <  1:918858/140‑1 (MQ=255)                                                                                                                         cAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGt           <  1:610233/140‑1 (MQ=255)                                                                                                                         cAAACAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGt           <  2:598408/140‑1 (MQ=255)                                                                                                                          aaaCAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTc          >  1:536324/1‑140 (MQ=255)                                                                                                                           aaCAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCa         <  1:234567/140‑1 (MQ=255)                                                                                                                            aCAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCAc        >  1:680341/1‑140 (MQ=255)                                                                                                                             cAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACt       <  2:372299/140‑1 (MQ=255)                                                                                                                             cAGTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACt       <  2:449136/140‑1 (MQ=255)                                                                                                                               gTTGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTgg     <  1:681393/140‑1 (MQ=255)                                                                                                                                 tGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTa   >  2:857263/1‑140 (MQ=255)                                                                                                                                 tGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTa   >  1:874544/1‑140 (MQ=255)                                                                                                                                 tGCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTa   >  2:501926/1‑140 (MQ=255)                                                                                                                                  gCCCATACGCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAg  >  1:606971/1‑140 (MQ=255)                                                                                                                                          |                                                                                                                                    GGGAGTTCCAGGGGCTATTTTCGCGGGTATTGCATCACGAATGCCATTTGCCCCTATACATCCATCGGCAATGTTGTTAATAATGGCTACAGGCCAGTCTCAACAGCTTATTACATTATTCAAACAGTTGCCCATACTCCCTGAAAAAGAAATCATTGAAATAATAACTGCGCAGAATAGCGTTGGTACACCTGCTTTATTTTTGGCTATGATGAACGGACATACTGACAACGTGAAAATATTTATGCAAGAAATTCAGTCACTGGTAG  >  NC_000913/1804105‑1804373

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑