BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	375082 =	NA (NA)	56 (0.860)	20/238	1.9	NA	intergenic (+201/‑377)	mhpE/mhpT	4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter
*	?	NC_000913	377372 =	NA (NA)	56 (0.860)	20/238	1.9	NA	noncoding (37/37 nt)	other	REP32a

Only 100 of 219 total aligned reads displayed.

TGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCA  >  NC_000913/374943‑375215

tgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTg                                                                                                                                         >  2:1046716‑M1/59‑140 (MQ=255)

tgaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCATTATCCGGCCTACGGATGGCGCGGGAATTTg                                                                                                                                         >  2:1193521‑M1/59‑140 (MQ=255)

 gaacgccttatccggtctacacttcgcccataaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGt                                                                                                                                        >  2:795319‑M1/58‑140 (MQ=255)

 GAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGt                                                                                                                                        <  2:1100524‑M1/140‑1 (MQ=255)

 GAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGt                                                                                                                                        >  2:250052‑M1/1‑140 (MQ=255)

  tgaacgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTa                                                                                                                                       <  1:938229‑M1/3‑1 (MQ=255)

      cgccttatccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGcc                                                                                                                                   >  2:429207‑M1/134‑140 (MQ=255)

          ttatccggcctgcacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGAt                                                                                                                               >  2:561885‑M1/130‑140 (MQ=255)

            atccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATaa                                                                                                                             >  1:551580‑M1/128‑140 (MQ=255)

             tccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAg                                                                                                                            >  2:41560‑M1/127‑140 (MQ=255)

              ccggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGa                                                                                                                           >  2:894924‑M1/126‑140 (MQ=255)

               cggcctacacttcgcccgtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGAc                                                                                                                          >  1:377938‑M1/125‑140 (MQ=255)

                     ggATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTa                                                                                                                   >  2:1204482/1‑140 (MQ=40)

                         ggcgcgggaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGt                                                                                                              >  1:470042/8‑140 (MQ=12)

                         ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAg                                                                                                                            <  1:505627/128‑1 (MQ=38)

                         ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAg                                                                                                                            >  2:505627/1‑128 (MQ=38)

                         ggCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGt                                                                                                              >  1:1154807/1‑140 (MQ=39)

                          gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                                                             >  1:346999/1‑126 (MQ=39)

                          gCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                                                             <  2:346999/126‑1 (MQ=38)

                           cGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCg                                                                                                            >  1:1111995/1‑140 (MQ=17)

                              gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                                                             <  1:602289‑M1/94‑1 (MQ=255)

                              gtaagccgtaggcctgataagacgcgcaAAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATaa                                                                                                                             >  2:602289‑M1/29‑122 (MQ=255)

                              gagaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCg                                                                                                            <  1:129728/137‑1 (MQ=34)

                              gagaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCAt                                                                                                         <  1:778092/140‑1 (MQ=34)

                               taaaccgtaggcctgataagacgcgcaTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATc                                                                                                        <  2:158929‑M1/113‑1 (MQ=255)

                               agaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAA‑GCGTCGCAt                                                                                                         <  1:647591/140‑1 (MQ=255)

                                gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGAcgc                                                                                                                        >  1:541425‑M1/108‑125 (MQ=255)

                                gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGAcgc                                                                                                                        <  2:541425‑M1/18‑1 (MQ=255)

                                gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCa                                                                                                       <  1:1286556‑M1/33‑1 (MQ=255)

                                gtaagccgtaggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCa                                                                                                       <  1:1036676‑M1/33‑1 (MQ=255)

                                gaATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGCAAA‑GCGTCGCATc                                                                                                        <  2:391895/140‑1 (MQ=11)

                                  aTTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAgg                                                                                                     <  2:32230/140‑1 (MQ=34)

                                         aggcctgataagacgcgcaaagcgtcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTgc                                                                                              >  2:1286556‑M1/99‑140 (MQ=255)

                                           tCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTgcgc                                                                                            >  1:846225/1‑140 (MQ=34)

                                                     cgcgTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGc                                                                                                    >  1:1199992/1‑122 (MQ=32)

                                                         ttAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATg                                                                              <  2:470042/140‑1 (MQ=34)

                                                           AGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgcg                                                                            <  2:340744‑M1/140‑1 (MQ=255)

                                                             CGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgcggc                                                                          <  1:1054047‑M1/140‑1 (MQ=255)

                                                               TCGCATCAGGCATG‑GCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCTGGATGCGGCGTg                                                                       <  1:255282‑M1/140‑1 (MQ=255)

                                                               TCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATG‑GCGCACGACTGCCGGATGCGGCGTg                                                                       >  2:1163753‑M1/1‑140 (MQ=255)

                                                               TCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGt                                                                        >  1:907456‑M1/1‑140 (MQ=255)

                                                               TCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGt                                                                        <  2:486236‑M1/140‑1 (MQ=255)

                                                                CGCATCAGGCATG‑GCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGa                                                                      <  2:849266‑M1/140‑1 (MQ=255)

                                                                CGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                                       >  2:846225‑M1/1‑140 (MQ=255)

                                                                 tcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACt                                                                                      >  2:1174080‑M1/75‑124 (MQ=255)

                                                                 tcgcatcaggcatggcgcacgactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACt                                                                                      <  1:1174080‑M1/50‑1 (MQ=255)

                                                                 GCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑CAAAGCGTCGCATCAGGCATG‑GCGCACGACTGCCGGATg                                                                              >  2:7720‑M1/1‑132 (MQ=255)

                                                                               CGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                        <  1:1016250‑M1/140‑1 (MQ=255)

                                                                                  ACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                                       <  1:538475‑M1/122‑1 (MQ=255)

                                                                                  ACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTg                                                                       >  2:538475‑M1/1‑122 (MQ=255)

                                                                                  ACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                     <  1:83299‑M1/140‑1 (MQ=255)

                                                                                  ACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                     <  1:329206‑M1/140‑1 (MQ=255)

                                                                                  ACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa                                                     <  2:802290‑M1/140‑1 (MQ=255)

                                                                                  ACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGGCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTa                                                     <  2:956289‑M1/140‑1 (MQ=255)

                                                                                   CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                    <  2:922901‑M1/140‑1 (MQ=255)

                                                                                   CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                    <  2:546472‑M1/140‑1 (MQ=255)

                                                                                   CGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAc                                                    <  1:204181‑M1/140‑1 (MQ=255)

                                                                                     gactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgg                                                  <  2:451883‑M1/86‑1 (MQ=255)

                                                                                     gactgccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACgg                                                  <  1:816358‑M1/86‑1 (MQ=255)

                                                                                         ccGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGACGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTAcacttcg                                              <  1:956289/140‑7 (MQ=255)

                                                                                          ccggatgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgc                                             >  1:451883‑M1/50‑140 (MQ=255)

                                                                                          cGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgc                                             <  1:40169/140‑1 (MQ=40)

                                                                                           ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                            <  1:849266/140‑1 (MQ=40)

                                                                                           ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                            <  1:922901/140‑1 (MQ=40)

                                                                                           ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                            <  2:1137793/140‑1 (MQ=40)

                                                                                           ggATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGgcg                                            <  2:826723/140‑1 (MQ=40)

                                                                                             aTGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGcgcg                                          <  1:306064/140‑1 (MQ=40)

                                                                                              tGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCga                                         <  2:147700/140‑1 (MQ=40)

                                                                                               tgcggcgtgaacgccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgag                                        >  2:277680‑M1/45‑140 (MQ=255)

                                                                                                cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                       <  1:215082/140‑1 (MQ=255)

                                                                                                cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                       <  1:1009427/140‑1 (MQ=255)

                                                                                                cggcgTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCgaga                                       <  2:204181/140‑1 (MQ=255)

                                                                                                     tGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTg                                  <  1:486236/140‑1 (MQ=255)

                                                                                                       aaCGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTa                                <  2:1016250/140‑1 (MQ=255)

                                                                                                          gCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGc                             <  1:628841/140‑1 (MQ=255)

                                                                                                            ccttatccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCt                           <  2:517491‑M1/109‑1 (MQ=255)

                                                                                                            cTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCt                           <  2:606425/140‑1 (MQ=255)

                                                                                                                 tccggtctacacttcgcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                      >  1:1236530‑M1/27‑140 (MQ=255)

                                                                                                                 ccGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATaa                      <  1:441511/140‑1 (MQ=255)

                                                                                                                      cTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGAcgc                 >  2:1055792/1‑140 (MQ=255)

                                                                                                                       tACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGAcgcg                <  2:838646/140‑1 (MQ=255)

                                                                                                                        aCGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGt               <  1:1055792/140‑1 (MQ=255)

                                                                                                                                gcccataaaccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCg       <  2:686733‑M1/129‑1 (MQ=255)

                                                                                                                                   gggAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt    <  1:566461/140‑1 (MQ=39)

                                                                                                                                    gtaagccgTAGGCCTGATAAGACGCGCAAA‑GCGTCGCATCAGGCAT‑GGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   >  1:1271332/8‑140 (MQ=11)

                                                                                                                                    gtaagccGTAGGCCTGATACGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:390973‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt         >  2:627396‑M1/8‑134 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGt         <  2:1083592‑M1/127‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAt    <  1:1083878‑M1/132‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:82406‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:901022‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:261193‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:287209‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:1143052‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:11283‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  2:229701‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:725987‑M1/133‑1 (MQ=255)

                                                                                                                                    gtaagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATc   <  1:626648‑M1/133‑1 (MQ=255)

                                                                                                                                     taagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa  <  1:765241‑M1/134‑1 (MQ=255)

                                                                                                                                     taagccGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCa  >  2:901022‑M1/7‑140 (MQ=255)

TGAACGCCTTATCCGGCCTACGGATGGCGTGAGAATTTGTAGGTCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCG‑TTA‑GCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCA  >  NC_000913/374943‑375215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.