| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,568,504 | 0 | T | G | 29.7% | 189.8 / 10.6 | 92 | T6P (ACC→CCC) | mdtM | multidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (18/46); new base G (27/0); total (46/46) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.75e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA > NC_000913/4568365‑4568641 | gcagGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGt > 1:103509/1‑140 (MQ=255) ccAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTaaaaaaa < 2:505864/140‑1 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaagag > 2:1177309/1‑136 (MQ=255) aCTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACATg > 2:61620/1‑140 (MQ=255) gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGaaaaaaaaatgggc > 2:470165/1‑133 (MQ=255) cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATa > 1:389165/1‑140 (MQ=255) aTCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAATGGCATaa > 2:1126895/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa > 1:666560/1‑140 (MQ=255) gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaa > 1:1082424/1‑140 (MQ=255) cATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaac < 1:41508/140‑1 (MQ=255) aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATaacaaaca < 1:543100/140‑1 (MQ=255) ttAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAacaaacaa < 2:389165/140‑1 (MQ=255) aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑Tcc < 2:666560/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGt < 1:541780/140‑1 (MQ=255) aCGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAC‑Acccttt > 1:688187/1‑136 (MQ=255) ccACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAACAAA‑TCCTTCTCCGga > 1:601604/1‑140 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAGAACAGCGTGGCGGCATGGCGGGCCAAAAAAAGAGGGATAAAAAAAAAA‑ACCCTGTTCGGAGaa > 2:881137/1‑140 (MQ=255) caTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAACAAC‑TCCTTTTCCGGAGaa > 1:335350/1‑140 (MQ=255) aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAACAAC‑TCCCTGTCCGGGGAA‑ccccc > 2:1078850/1‑139 (MQ=255) aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAAAGGGATAACAAAAAAA‑ACCCTTTTCGGGGAA‑ACCCa > 2:670551/1‑140 (MQ=255) gATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAGAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAAc < 1:881137/140‑1 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACg > 1:716369/1‑140 (MQ=255) aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAACGGGGGTAACAAAAAACACCCCTTTCCGGGAAA‑CCCCacc > 2:297065/1‑138 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACggg < 1:908026/140‑1 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAAC‑ACCTTTTCCGGAGAA‑CCCCaaacgg > 2:607214/1‑136 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAC‑TCCTTGTCCGGAGAA‑ACCCAACggg > 2:21804/1‑140 (MQ=255) cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGAGGCATAAAAAACAAA‑CCCCTTTCCGGAGAA‑CCCCCACggg > 2:629084/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACgggg > 1:847023/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGGAAAAAACGTGGCGTAACAAAAAAA‑TCCTTGTCCGGGGGA‑CCCCAACgggg > 1:845645/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAACAAAAAAC‑TCCTTGTCCCGAGAA‑CCCCAACgggg > 1:935235/1‑140 (MQ=255) ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGCAAAAAAAAGCGGGACAACAAACAAA‑TTCTTTTTCGGAGAA‑CCCCCACgggg > 1:1012331/1‑140 (MQ=255) cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGa < 1:48690/140‑1 (MQ=255) gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCATAAAAAAAAAC‑CCCTTGTCCGGAGAA‑CCCCCACGGGGgaaa > 2:1252605/1‑140 (MQ=255) tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACg < 2:51322/140‑1 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGa > 1:200456/1‑140 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAAAAAAAAAC‑TCCTTGTCCGGGGAACCCCCAAGGGGGaaaaga > 2:1071346/1‑138 (MQ=255) ggATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAATGGCCAAACAAAAAAC‑ACCTTGTCCGGGGGA‑ACCCAACGGGGAAAACGa > 2:32916/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCCTAAAAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGGAAACGaa > 1:1217890/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACATGGGCTAAAAAACAAC‑TCCTTGTCCGGAGGA‑CCCCCACGGGGGAAAAGaa > 2:714483/1‑140 (MQ=255) gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCATAACAAAAAAA‑CCCTTTTCCCGGGAA‑CCCCCACCGGGGAAAAGaa > 2:120810/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGaaa > 1:855785/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGGCTAAAAAAAAAA‑CCCTTTTCCGGAGAA‑CCCCAAAGGGGAAAACGgaa > 2:908026/1‑140 (MQ=255) aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCGAAACAAACAAC‑ACCTTTGCCGGAGAA‑ACCCAACGGGGgaaaaaaaa > 2:1256833/1‑135 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTTTCCGGAGAA‑CCCCAACGGGGGAAAAGAAATTCaa > 1:921104/1‑140 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGaaaa < 2:1037352/130‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGaaaa > 1:1037352/1‑130 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCaa < 1:976335/140‑1 (MQ=255) aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGCGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACAAAAATCaa > 1:1146305/1‑140 (MQ=255) tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAAt < 1:1200351/140‑1 (MQ=255) tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAAt < 2:103509/140‑1 (MQ=255) gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGGGGGATAAAAAACAAC‑TCCCTTTCCGGGGAA‑CCCCCACGGGGGAAAAGAAAATTAATAcc > 2:861565/1‑140 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGGATAAAAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAAAGAAAATCAATAccc > 1:395534/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCAAAAAAAAAAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGGAAAAGAAAATCAATAccc > 2:706848/1‑139 (MQ=255) tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAA‑TCCTTTTCCGGGGAA‑ACCCCACGGGGGAAAAGAAAATTAAAAccc > 2:371908/1‑139 (MQ=255) aCAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCg < 2:1082424/140‑1 (MQ=255) gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTa < 1:607214/140‑1 (MQ=255) aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTaa < 1:706848/140‑1 (MQ=255) cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGa < 1:958146/140‑1 (MQ=255) cGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGa < 1:371908/140‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 2:1001191/140‑1 (MQ=255) cagcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACg < 2:855785/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:170865/140‑1 (MQ=255) caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:297065/140‑1 (MQ=255) acaggTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGaaa < 1:643481/136‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAgg < 2:200456/140‑1 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAACAAAAAAC‑ACCTTGTCCGGGGAA‑CCCCCACGGGGGAAAAGAAAATCAAAACCGTCGGGAATGACGaaaag > 2:918058/1‑138 (MQ=255) aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAAAAAC‑TCCCTGTCCGGGGAA‑ACCCAACGGGGGAAAAGAAAATTAATAACCTCGGGAATGACGaaaag > 2:658977/1‑138 (MQ=255) aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAACAAC‑CCCTTGTCCGGAGAA‑CCCCCACGGGGAAAAAGAAAATCAAAACCGTCGGGAATGACGAAAAGc > 2:886182/1‑140 (MQ=255) aGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAAGGCATAAAAAAAAAC‑ACCCTGTCCGGGGAA‑ACCCCACAGGGGAAAAGAAAATCAATAACGTCGGGAATGACGaaaagg > 2:1082513/1‑137 (MQ=255) gTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCa < 1:1078850/140‑1 (MQ=255) tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAg < 1:1252605/140‑1 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAAAGTGGCATAACAAAAAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGGAAAAGAAAATCAATACCGTCGGGAATGACGAAAAGCAGGGgag > 2:384358/1‑140 (MQ=255) cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAACAAAAAAC‑TCCCTGTCCGGAGAA‑ACCCCACCGGGGAAACGAAAATCAAAACCGTCGGGAATGACGAAAAGCAGGGgag > 2:1216664/1‑140 (MQ=255) aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTgaga < 2:1128974/140‑1 (MQ=255) aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAg < 1:629084/140‑1 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGGATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCCACGGGGAAAACGAAAATCAATACCGTCGGTAATGACGAAAAGCAGGTGAGAAggg > 1:1087335/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGGGGCATAAAAAAAAAC‑CCCTTGTCCGGAGAA‑CCCCAAAGGGGGAAACGAAAATCAAAACCCTCGGGAATGACGAAAAGCAGGTGGGAAggg > 2:662221/1‑140 (MQ=255) tCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAAGGGCACAAAAAACAAC‑CCCCTCTCCGGAGAA‑CCCCAACAGGGGAAAAGAAAATTAATACCGTCGGGAAAAACGGAAGACAGGGGAGaaaag > 2:72935/1‑137 (MQ=255) aCGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAACAAGGGGACAAAAACAAC‑CCCCTTTCCGCTCAA‑CCCCAACCGGGGAAACAAAAATCAATACCGACGGGAATGAAGAAAGAGAAGGGAGAAGGGCaa > 2:1277461/1‑140 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAAc < 1:72935/140‑1 (MQ=255) cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGGAAAAAAAAGTGGCATAAAAAACAAC‑ACCTTGTCCGGAGAA‑CCCCAACGGGGGAAACGAAAATCAATACCGTCGGTAAAGACAAAAGGCAGGGGGGAAGGGCAAc > 2:699294/1‑140 (MQ=255) gCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACg < 2:1012331/140‑1 (MQ=255) aTCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGATGCAAAACAAACAAC‑TCCTTGTTCGGAGAA‑CCCCCACAGGGGAAACGAAAATCAAAACCGCCGGTAAAGACGAAAGGCAGGGGAGGAGGGCAACgaag > 2:456629/1‑138 (MQ=255) tctggAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTTCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGAc < 2:326061/137‑1 (MQ=255) aaaaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCaa < 1:173694/140‑1 (MQ=255) aaaCAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAAt < 1:670551/140‑1 (MQ=255) aaCAGCGTGGCGGCATGGCGGGGAAAAAAACGTGGCATAAAAAAAAAA‑TCCCTGTCCGGAGAA‑CCCCAACGGGGAAAAAGAAAATCAATACCCCCGGGAATGACGAAAAGCAGGGGAGAAGGGGAACGAGACTGCaaaag > 2:173694/1‑138 (MQ=255) agcccggcggcATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:1138808/135‑1 (MQ=255) aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:384358/140‑1 (MQ=255) aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:610575/140‑1 (MQ=255) aGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTAc < 1:21804/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:1216664/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 1:861565/140‑1 (MQ=255) gCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt < 2:268215/140‑1 (MQ=255) cGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTg > 1:1101263/1‑140 (MQ=255) aTGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATg < 2:1217890/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:1126895/140‑1 (MQ=255) ggCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa < 1:32916/140‑1 (MQ=255) gggTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATc < 2:115794/140‑1 (MQ=255) ggTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCa < 1:1277461/140‑1 (MQ=255) | GCAGGGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGGTAAAAAAACGTGGCATAACAAACAAC‑TCCTTGTCCGGAGAA‑CCCCAACGGGGAAAACGAAATTCAATACCGTCGGTAATGACGAAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTAATCA > NC_000913/4568365‑4568641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |