Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	4,502,068	C→A	intergenic (+479/+35)	yjgZ → / ← insG	KpLE2 phage‑like element; uncharacterized protein YjgZ/KpLE2 phage‑like element; IS4 putative transposase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	4,502,068	0	C	A	100.0%	274.5 / NA	77	intergenic (+479/+35)	yjgZ/insG	KpLE2 phage‑like element; uncharacterized protein YjgZ/KpLE2 phage‑like element; IS4 putative transposase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (31/46);  total (31/46)

TGTCTTTAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAACGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCAC  >  NC_000913/4501933‑4502204                                                                                                                                        |                                                                                                                                         tGTCTTTAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGaaa                                                                                                                                      >  2:373394/1‑140 (MQ=255)     tttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAgg                                                                                                                                  <  2:973860/140‑1 (MQ=255)     tttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAgg                                                                                                                                  <  1:1237861/140‑1 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAgg                                                                                                                                  >  1:1065306/1‑139 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAgg                                                                                                                                  <  2:1065306/139‑1 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGc                                                                                                                                 >  1:1050773/1‑140 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGc                                                                                                                                 >  2:289526/1‑140 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGc                                                                                                                                 >  1:145834/1‑140 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGc                                                                                                                                 >  1:619228/1‑140 (MQ=255)      ttAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGc                                                                                                                                 >  1:214258/1‑140 (MQ=255)        aGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCAt                                                                                                                               <  2:820515/140‑1 (MQ=255)        aGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCAt                                                                                                                               <  1:924933/140‑1 (MQ=255)          aTCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCt                                                                                                                             <  1:1235017/140‑1 (MQ=255)          aTCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCt                                                                                                                             <  2:551286/140‑1 (MQ=255)          aTCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCt                                                                                                                             >  2:1263209/1‑140 (MQ=255)          aTCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCt                                                                                                                             >  1:731237/1‑140 (MQ=255)          aTCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCt                                                                                                                             <  1:159801/140‑1 (MQ=255)            ccGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTg                                                                                                                           <  2:694353/140‑1 (MQ=255)             cGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCAt                                                                                                                               >  1:85727/1‑135 (MQ=255)             cGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCAt                                                                                                                               <  2:85727/135‑1 (MQ=255)             cGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTgg                                                                                                                          <  2:731237/140‑1 (MQ=255)             cGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTgg                                                                                                                          <  2:1077511/140‑1 (MQ=255)             cGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTgg                                                                                                                          >  1:1218199/1‑140 (MQ=255)              gCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGt                                                                                                                         <  2:641419/140‑1 (MQ=255)              gCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCCTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGt                                                                                                                         <  2:803212/140‑1 (MQ=255)                         ggCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGcc                                                                                                              <  1:59693/140‑1 (MQ=255)                          gCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCca                                                                                                             <  1:393993/140‑1 (MQ=255)                          gCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCca                                                                                                             <  1:368349/140‑1 (MQ=255)                            aTGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagt                                                                                                           >  1:320439/1‑140 (MQ=255)                             tGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagtc                                                                                                          <  2:1218199/140‑1 (MQ=255)                             tGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagtc                                                                                                          <  2:214258/140‑1 (MQ=255)                             tGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagtc                                                                                                          <  2:856168/140‑1 (MQ=255)                             tGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagtc                                                                                                          <  1:2281/140‑1 (MQ=255)                             tGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagtc                                                                                                          <  1:837108/140‑1 (MQ=255)                             tGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCcagtc                                                                                                          <  2:1053331/140‑1 (MQ=255)                                 aaTGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGtt                                                                                                      <  1:289435/140‑1 (MQ=255)                                       aaaCAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCaa                                                                                                <  2:145834/140‑1 (MQ=255)                                         aCAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAact                                                                                              >  1:70305/1‑140 (MQ=255)                                          cAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAactg                                                                                             >  1:965326/1‑140 (MQ=255)                                           aGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAactga                                                                                            <  2:214717/140‑1 (MQ=255)                                           aGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAactga                                                                                            <  2:965326/140‑1 (MQ=255)                                            gTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAGATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAactgac                                                                                           <  1:853795/140‑1 (MQ=255)                                            gTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAactgac                                                                                           <  2:29721/140‑1 (MQ=255)                                              cAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAactgactg                                                                                         >  2:759543/1‑140 (MQ=255)                                               aaaGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGTCAGTCAGTTAAACAACTGACTgg                                                                                        >  2:1017863/1‑140 (MQ=255)                                               aaaGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTgg                                                                                        >  2:1210191/1‑140 (MQ=255)                                                  gATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGctc                                                                                     <  2:70305/140‑1 (MQ=255)                                                     tgtgGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGctc                                                                                     <  2:441240/137‑1 (MQ=255)                                                     tgtgGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGctc                                                                                     >  1:441240/1‑137 (MQ=255)                                                       tgGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCttttt                                                                                >  2:607902/1‑140 (MQ=255)                                                            ttGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCgggg                                                                           <  1:373394/140‑1 (MQ=255)                                                            ttGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCgggg                                                                           <  1:759543/140‑1 (MQ=255)                                                                           ggggACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTcc                                                            >  1:489856/1‑140 (MQ=255)                                                                                cAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGc                                                       <  1:1192520/140‑1 (MQ=255)                                                                                cAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGc                                                       <  1:123951/140‑1 (MQ=255)                                                                                 aaaaaaGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGcc                                                      >  1:1193423/1‑140 (MQ=255)                                                                                 aaaaaaGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGcc                                                      >  1:139045/1‑140 (MQ=255)                                                                                  aaaaaGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCct                                                     <  2:320439/140‑1 (MQ=255)                                                                                      aGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTcc                                                 >  2:36439/1‑140 (MQ=255)                                                                                           aGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCctc                                                    >  2:125036/1‑132 (MQ=255)                                                                                           aGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCctc                                                    <  1:125036/132‑1 (MQ=255)                                                                                           aGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTAc                                            <  2:1193423/140‑1 (MQ=255)                                                                                           aGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTAc                                            <  1:1263209/140‑1 (MQ=255)                                                                                                 ctcGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCActct                                      <  1:829775/140‑1 (MQ=255)                                                                                                     ttGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCggg                                  >  1:585639/1‑140 (MQ=255)                                                                                                      tGGCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGa                                 <  1:223773/140‑1 (MQ=255)                                                                                                       ggCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCGCTCTCGGGaa                                <  2:619228/140‑1 (MQ=255)                                                                                                       ggCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGaa                                >  2:1109035/1‑140 (MQ=255)                                                                                                       ggCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGaa                                >  1:995386/1‑140 (MQ=255)                                                                                                       ggCAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGaa                                <  2:768218/140‑1 (MQ=255)                                                                                                         cAACCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAgg                              <  1:36439/140‑1 (MQ=255)                                                                                                           aCCAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGcc                            <  2:585639/140‑1 (MQ=255)                                                                                                            ccAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGccc                           >  1:174647/1‑140 (MQ=255)                                                                                                             cAGATAATTTAACAGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCt                          <  2:139045/140‑1 (MQ=255)                                                                                                                          aGTTGATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTc             >  1:166386/1‑140 (MQ=255)                                                                                                                              gATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTa         >  1:1171321/1‑140 (MQ=255)                                                                                                                              gATGCTGAAAAGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTa         >  1:7543/1‑140 (MQ=255)                                                                                                                                     aaaaGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTcac  >  1:980437/1‑140 (MQ=255)                                                                                                                                        |                                                                                                                                         TGTCTTTAGATCCGCTGGCCTGCGGGCATGACAATGTCAAACAGTCAAAGATTGTGGCGTTGACGGTCAGTCTTGGGGACAAAAAAGCTCAGTATTCTCGTTGGCAACCAGATAATTTAACAGTTGATGCTGAAACGAAATAGGCATCTTGGTTCTGTAATGCCAGTCAGTTAAGCAACTGACTGGCTCTTTTTCGGGGCTGTGGGGTATTTCCAGGGCCTCTCCTTTACCACTCTCGGGAAGGCCCTTTCCCTTCTTGTCGGTAATTTCAC  >  NC_000913/4501933‑4502204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑