BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3363001 =	130 (1.170)	144 (1.310)	72/274	0.2	68.2%	coding (195/2382 nt)	yhcD	putative fimbrial usher protein YhcD
*	?	NC_000913	3766087 =	5 (0.050)	144 (1.310)	72/274	0.2	68.2%	coding (3905/4134 nt)	rhsA	rhs element protein RhsA

Only 100 of 285 total aligned reads displayed.

AATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362864‑3363140

 attagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTa                                                                                                                                            <  1:1631814‑M1/4‑1 (MQ=255)

  ttagttcctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTaa                                                                                                                                           <  2:1545544‑M1/5‑1 (MQ=255)

        cctgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCg                                                                                                                                     <  2:521440‑M1/11‑1 (MQ=255)

          tgaagtacgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aa                                                                                                                                  <  2:1861787‑M1/13‑1 (MQ=255)

           tataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaa                                                                                                                                 >  2:858472/1‑140 (MQ=255)

            ataGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑aaaa                                                                                                                                >  1:106359/1‑140 (MQ=255)

                acgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑aaaaaaaa                                                                                                                            >  2:9712‑M1/122‑140 (MQ=255)

                 cgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAg                                                                                                                           <  1:668226‑M1/20‑1 (MQ=255)

                 cgtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAg                                                                                                                           <  2:1704879‑M1/20‑1 (MQ=255)

                  gtcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAgg                                                                                                                          >  1:1270103‑M1/120‑140 (MQ=255)

                  aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAgg                                                                                                                          <  2:232132/140‑1 (MQ=255)

                  aTTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAgg                                                                                                                          <  1:877611/140‑1 (MQ=255)

                   ttGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAgg                                                                                                                          <  1:1708841/139‑1 (MQ=255)

                   tcacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGc                                                                                                                         <  2:562478‑M1/22‑1 (MQ=255)

                    cacatctgtcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCa                                                                                                                        >  1:1538510‑M1/118‑140 (MQ=255)

                     gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       >  2:1335410/1‑140 (MQ=255)

                     gCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCaa                                                                                                                       <  2:680105/140‑1 (MQ=255)

                            tcgggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCt                                                                                                                >  2:1731366‑M1/110‑140 (MQ=255)

                               ggttttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTAcg                                                                                                             <  2:1215175‑M1/34‑1 (MQ=255)

                                   ttttcccatcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCt                                                                                                         >  2:1631814‑M1/103‑140 (MQ=255)

                                   tGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAGTATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCt                                                                                                         <  2:34451/140‑1 (MQ=255)

                                          atcactccagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTtgatg‑a                                                                                                 <  1:1102983‑M1/45‑1 (MQ=255)

                                                 tAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGc                                                                                          <  2:118257/140‑1 (MQ=255)

                                                 cagaatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGc                                                                                          >  1:1458592‑M1/89‑140 (MQ=255)

                                                    aatctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGAc                                                                                       <  2:1807387‑M1/55‑1 (MQ=255)

                                                      tctgtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATCGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACAt                                                                                     >  2:1467943‑M1/84‑140 (MQ=255)

                                                         gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACAt                                                                                     >  2:454120‑M1/81‑137 (MQ=255)

                                                         gtcatttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACAt                                                                                     <  1:454120‑M1/57‑1 (MQ=255)

                                                          tAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGt                                                                                 <  1:1875568/140‑1 (MQ=255)

                                                              ttattatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATgg                                                                                           >  2:206982‑M1/76‑126 (MQ=255)

                                                                attatgtcattgacacgatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGAt                                                                           >  1:1804062‑M1/74‑140 (MQ=255)

                                                                       tAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCAt                                                                    >  2:131212/1‑140 (MQ=255)

                                                                        aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  1:1601677/1‑140 (MQ=255)

                                                                        aaTATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCAtt                                                                   >  2:274680/1‑140 (MQ=255)

                                                                          tatatCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTc                                                                 >  1:370970/1‑140 (MQ=255)

                                                                             atCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGc                                                              >  1:1234988/1‑140 (MQ=255)

                                                                               cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCGAAAAAAAAAGGCAACATTGCTACGCGCTTTGATGAAAAATGGCGACATTTGTCTTGATCAGGCATTTCTGc                                                              >  1:1018369/1‑140 (MQ=255)

                                                                               cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:601493/1‑140 (MQ=255)

                                                                               cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  1:7717/1‑140 (MQ=255)

                                                                               cGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaa                                                            >  2:396819/1‑140 (MQ=255)

                                                                                gatcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaac                                                           <  1:114934‑M1/83‑1 (MQ=255)

                                                                                gCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑‑AAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:1576811/1‑140 (MQ=255)

                                                                                 cATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaaca                                                          >  1:873010/1‑140 (MQ=255)

                                                                                  tcagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGcaacaa                                                         <  2:602478‑M1/85‑1 (MQ=255)

                                                                                   cagttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAg                                                        >  1:681236‑M1/55‑140 (MQ=255)

                                                                                      ttatccctgtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCg                                                     <  1:1379745‑M1/89‑1 (MQ=255)

                                                                                        tttCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGt                                                   >  1:211464/1‑140 (MQ=255)

                                                                                              gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1757841‑M1/97‑1 (MQ=255)

                                                                                              gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  1:1401994‑M1/97‑1 (MQ=255)

                                                                                              gtgtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             <  2:1527182‑M1/97‑1 (MQ=255)

                                                                                              gTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaa                                             >  1:1165169/1‑140 (MQ=255)

                                                                                               ttCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTaaaaa                                            >  2:490089/1‑140 (MQ=255)

                                                                                                tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGTAACAAGCCGGTTTAAAAAt                                           >  2:1744776/1‑140 (MQ=255)

                                                                                                tCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           >  1:1499197/1‑140 (MQ=255)

                                                                                                gtctgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAAt                                           <  1:1737456‑M1/99‑1 (MQ=255)

                                                                                                   tgcaacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTcc                                        <  2:1236066‑M1/102‑1 (MQ=255)

                                                                                                     ccGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGGTTAAAAATTCCtt                                      <  1:999642/140‑1 (MQ=255)

                                                                                                     caacatttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCtt                                      <  2:1880591‑M1/104‑1 (MQ=255)

                                                                                                           ttccacgagaagctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTgaag                                <  1:1662564‑M1/110‑1 (MQ=255)

                                                                                                              gCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGaaa                             >  1:336923/1‑140 (MQ=255)

                                                                                                                   gTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAAt                        >  2:914250/1‑140 (MQ=255)

                                                                                                                      gctatcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGc                     <  1:245526‑M1/121‑1 (MQ=255)

                                                                                                                         atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:1859837‑M1/17‑140 (MQ=255)

                                                                                                                         atcattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:862584‑M1/17‑140 (MQ=255)

                                                                                                                         atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑GAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:1146665/140‑1 (MQ=255)

                                                                                                                         atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  1:731136/140‑1 (MQ=255)

                                                                                                                         atTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:1667969/140‑1 (MQ=255)

                                                                                                                           tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  2:887398/140‑1 (MQ=255)

                                                                                                                           tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:544896/140‑1 (MQ=255)

                                                                                                                           tCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:964215/140‑1 (MQ=255)

                                                                                                                           cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:100157‑M1/15‑140 (MQ=255)

                                                                                                                           cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:469205‑M1/15‑140 (MQ=255)

                                                                                                                           cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:1420732‑M1/15‑140 (MQ=255)

                                                                                                                           cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  1:494306‑M1/15‑140 (MQ=255)

                                                                                                                           cattgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:1102983‑M1/15‑140 (MQ=255)

                                                                                                                            cACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTAc               <  1:282749/140‑1 (MQ=255)

                                                                                                                             ttgttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              <  2:581905‑M1/128‑1 (MQ=255)

                                                                                                                             aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  >  1:311733/1‑136 (MQ=255)

                                                                                                                             aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGt                  <  2:311733/136‑1 (MQ=255)

                                                                                                                             aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTAcc              >  2:1840954/1‑139 (MQ=255)

                                                                                                                             aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:1394865/1‑140 (MQ=255)

                                                                                                                             aCTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACg              >  2:1323207/1‑140 (MQ=255)

                                                                                                                               tGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            <  1:462284/140‑1 (MQ=255)

                                                                                                                               gttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  1:1184867‑M1/11‑140 (MQ=255)

                                                                                                                                ttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:697193‑M1/126‑1 (MQ=255)

                                                                                                                                ttatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:697193‑M1/10‑135 (MQ=255)

                                                                                                                                 tatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                >  2:291352‑M1/9‑134 (MQ=255)

                                                                                                                                 tatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          <  2:119754‑M1/132‑1 (MQ=255)

                                                                                                                                 tatatctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACta          <  2:1848638‑M1/132‑1 (MQ=255)

                                                                                                                                  tAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         >  1:939511/1‑140 (MQ=255)

                                                                                                                                  tAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         >  1:1825034/1‑140 (MQ=255)

                                                                                                                                  tAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTATTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtat         >  2:328955/1‑140 (MQ=255)

                                                                                                                                    atctaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTa                <  1:824730‑M1/126‑1 (MQ=255)

                                                                                                                                     tccaAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATg                       <  2:1605666‑M1/119‑1 (MQ=255)

                                                                                                                                     tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  2:1072740/140‑1 (MQ=255)

                                                                                                                                     tATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACtatata      <  1:1339907/140‑1 (MQ=255)

                                                                                                                                        aAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGAc            >  2:720676‑M1/2‑131 (MQ=255)

                                                                                                                                         AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATtgc  <  2:771630‑M1/140‑2 (MQ=255)

                                                                                                                                         AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:1092939‑M1/140‑1 (MQ=255)

                                                                                                                                         AGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGt  <  1:1687527‑M1/140‑1 (MQ=255)

AATGCAGATGGTATAGAGATTGCCGCTGTTGATTTTGATCGGGAAACATTAAAATCACTAGGTGTAGATCCTAATATATCGCATTATTTTTCCCGTTCAGCCCGTTTTTTGCCAGGTGAATATTCACTGATAGTATCAGTAAATGGCG‑AAAAAAAAGGCAACATTGCTACGCGCTTTGATG‑AAAATGGCGACATTTGTCTTGATCAGGCATTTCTGCAACAAGCCGGTTTAAAAATTCCTTCTGAAGAAAAAAATGGCTGTTACGACTATATATTGT  >  NC_000913/3362864‑3363140

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.