Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,568,5040TG26.6% 325.8 / 15.9 157T6P (ACC→CCC) mdtMmultidrug efflux pump/bile salt:H(+) antiporter/Na(+):H(+) antiporter/K(+):H(+) antiporter
Reads supporting (aligned to +/- strand):  ref base T (32/81);  new base G (41/0);  total (76/81)
Fisher's exact test for biased strand distribution p-value = 1.23e-17
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 165 total aligned reads displayed.

GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA  >  NC_000913/4568369‑4568637
                                                                                                                                        |                                                                                                                                        
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTaaaa                                                                                                                                      >  1:1138068/1‑140 (MQ=255)
gggCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTaaaa                                                                                                                                      <  2:1075089/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCa                                                                                                                            <  1:1025456/140‑1 (MQ=255)
          gACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCCTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCa                                                                                                                            <  2:1417503/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATa                                                                                                                          <  1:585260/140‑1 (MQ=255)
            cATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATa                                                                                                                          <  2:1303744/140‑1 (MQ=255)
              tCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATaac                                                                                                                        <  1:82544/140‑1 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATaacaaa                                                                                                                     >  1:1488837/1‑140 (MQ=255)
                 gCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATaacaaa                                                                                                                     >  1:759614/1‑140 (MQ=255)
                   aTTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATaacaaaca                                                                                                                   >  1:1565917/1‑140 (MQ=255)
                     tAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAaacaac                                                                                                                 <  1:1399877/140‑1 (MQ=255)
                       aaaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAAAGGCATAAAAaaaaaccc                                                                                                               >  2:427229/1‑138 (MQ=255)
                        aaTCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTcc                                                                                                              <  2:1871149/140‑1 (MQ=255)
                             cGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTc                                                                                                         <  2:771510/140‑1 (MQ=255)
                               tACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCg                                                                                                       <  2:101561/140‑1 (MQ=255)
                                aCCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCgg                                                                                                      <  2:849150/140‑1 (MQ=255)
                                  cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGg‑ag                                                                                                   <  1:987448/140‑1 (MQ=255)
                                  cacaTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAATGGCATAAAAAAAAACTCCTTGTCCgggg                                                                                                    >  2:1299963/1‑138 (MQ=255)
                                     aTTAATGATCCCAGGCTGGGTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGGGGCATAAAAAACAACTCCTTGTCCGG‑AGAAc                                                                                                >  2:1461757/1‑140 (MQ=255)
                                     aTTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGG‑AGAAc                                                                                                >  1:1517204/1‑140 (MQ=255)
                                      ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAAcc                                                                                               <  1:481205/140‑1 (MQ=255)
                                      ttAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGG‑AGAAcc                                                                                               >  1:541868/1‑140 (MQ=255)
                                         cagATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCa                                                                                            <  1:425499/138‑1 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGGATAACAAAAAACACCTTTTCCGG‑AGAAccccc                                                                                            >  2:341206/1‑139 (MQ=255)
                                         aTGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCCG‑AGAAccccc                                                                                            >  2:1115413/1‑139 (MQ=255)
                                           gATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑c                                                                                         <  1:818457/140‑1 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAAAAACTCCTTTTCCCG‑AGAACCCCAA‑Cg                                                                                        >  1:1069183/1‑140 (MQ=255)
                                            aTCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAAAAAAAAACTCCTTTTCCGG‑AGAACCCCAA‑Cg                                                                                        >  2:818457/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAAGGGCATAAAAAAAAAATCCTTTTCCGG‑GGAACCCCCA‑Aggg                                                                                      >  2:192259/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGAGGCGTAACAAAAAAACCCTTGTCCGG‑GGAACCCCAA‑Cggg                                                                                      >  2:478091/1‑140 (MQ=255)
                                              cccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGAGGCATAAAAAAAAAACCCTTTTCCGG‑AGAAACCCCA‑Aggg                                                                                      >  2:749020/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑Cgggg                                                                                     >  1:214349/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCCG‑AGAACCCCCA‑Ccggg                                                                                     >  1:1189146/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGGGGCATAACAAAAAACTTCCTTTCCGG‑AGAAACCCAA‑Cgggg                                                                                     >  1:1163910/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGG‑AGAACCCCAA‑Cgggg                                                                                     >  2:1129778/1‑140 (MQ=255)
                                               ccAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAACTGGGCAAACAAACAACACCTTCGCCGG‑GCGACCCCaaacggg                                                                                      >  1:777696/1‑135 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGa                                                                                    <  2:1169406/140‑1 (MQ=255)
                                                cAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGa                                                                                    <  1:739588/140‑1 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGGGGCATAAAAAAAAACTCCTTATTCGG‑AGAACCCCAA‑AGGGGaa                                                                                   >  1:1266951/1‑140 (MQ=255)
                                                 aGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GCCAAAAAACGGCGCATAACAAAAAAATCCCTGTCCGG‑AGCAGCCCAATCGGGGa                                                                                    >  2:1809577/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGaaaa                                                                                 <  1:668792/140‑1 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGaaaa                                                                                 <  1:216504/140‑1 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAACTGGGATAAAAAAAAACTCCTTTTCCGG‑AGAAACCCAA‑CGGGGgaaa                                                                                 >  2:1860603/1‑140 (MQ=255)
                                                   gCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGTGGCATAAAAAACAACTCCTTGTCCGG‑AGAACCCCCA‑CCGGGaaaa                                                                                 >  1:1555174/1‑140 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACg                                                                               <  1:416972/140‑1 (MQ=255)
                                                     tGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACg                                                                               <  2:214349/140‑1 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGaa                                                                             >  1:1221845/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGTGGCATAACAAAAAAATCCTTGTCCGG‑AGAACCCCAA‑CGGGGGAAAAGaa                                                                             >  2:791860/1‑140 (MQ=255)
                                                       gATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GAAAAAAAAAATGGGAAAAAAAAAAAAACCCTTTACGGAAAAAACCCAA‑GGGGGaaaagaa                                                                              >  2:1613220/1‑137 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAACAAATCCTTGTCCCG‑AGAACCCCCA‑CGGGGAAAAAGaaa                                                                            >  1:1728770/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAACCGGCATAACAAACAACCCCTTTTTCGG‑AGAACCCCCA‑CGGGGGAAAAGaaa                                                                            >  1:919678/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGTGGCATAACAAAAAACTCCTTGTCCGG‑GGAACCCCAA‑CGGGGAAAACGaaa                                                                            >  1:44056/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGGGGGATAAAAAACAAACCCCTGTCCGG‑AGAACCCCAA‑CGGGGGAAACGaaa                                                                            >  2:1531158/1‑140 (MQ=255)
                                                        aTCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGGGGCATAACAAAAAACCCCTTTTCCGG‑GGAACCCCAA‑CGGGGGAAAAGaaa                                                                            >  2:416972/1‑140 (MQ=255)
                                                          cAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAAtt                                                                          <  2:1788308/140‑1 (MQ=255)
                                                          cAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAAAGaaaat                                                                          >  1:431692/1‑138 (MQ=255)
                                                            gATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTTCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCa                                                                        <  1:375286/140‑1 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCCTAACAAAAAACTCCCTGTCCGG‑AGAACCCCCA‑CGGGGGAAACGAAAATCaa                                                                       >  2:404065/1‑140 (MQ=255)
                                                             aTCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAAAGAAAATCaa                                                                       >  2:1711530/1‑140 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAAt                                                                      <  2:1336772/140‑1 (MQ=255)
                                                              tCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGGATAAAAAAAAACTCCCTGTCCGG‑GGAACCCCCA‑CGGGGAAAAAGAAAATCaaa                                                                      >  2:1665191/1‑139 (MQ=255)
                                                               ccGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATa                                                                     <  1:791860/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATGcc                                                                   <  2:1235033/140‑1 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGGGTAACAAACAAAACCTTGTCCGG‑AGAAACCCAA‑CCGGGAAAACGAAAATAAAAAcc                                                                   >  2:1369513/1‑140 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGTGGCATAACAAAAAAACCCCTGTCCGG‑AGAACCCCCA‑CGGGGAAAACGAAATTCAATAcc                                                                   >  2:1452806/1‑140 (MQ=255)
                                                                 gTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGTGGCATAAAAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGGAAAAGAAATTCAATAcc                                                                   >  2:562413/1‑140 (MQ=255)
                                                                  tCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGCGGGATAACAAAAAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAAAGAAAATCAATACCg                                                                  >  2:496805/1‑140 (MQ=255)
                                                                   cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGt                                                                 <  2:1488837/140‑1 (MQ=255)
                                                                   cGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGt                                                                 <  1:1369513/140‑1 (MQ=255)
                                                                        gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTa                                                            <  1:1034579/140‑1 (MQ=255)
                                                                        gATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTa                                                            <  1:404065/140‑1 (MQ=255)
                                                                         aTACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAAAAAAAAAACCCCTTTCCGG‑GGAAACCCAA‑AGGGGGAAAAGAAAATCAAAACCCTCGGGaa                                                           >  2:1755692/1‑140 (MQ=255)
                                                                               agcaAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACGTGGCATAACAAACAACTCC‑TGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑aa                                                   >  1:173074/1‑140 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑aaa                                                  <  2:541868/140‑1 (MQ=255)
                                                                                 caAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAATGGCATAACAAACAAATCCTTGTCCGG‑GGAACCCCCA‑CGGGGGAAACGAAAATCAATACCCTCGGGAATGACG‑aaa                                                  >  2:93915/1‑140 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCGATACCGTCGGAAATGACG‑AAAgg                                                <  1:1613220/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAgg                                                <  1:1070052/140‑1 (MQ=255)
                                                                                   aaGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAgg                                                <  2:659031/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACACCTCCTTGTCCGG‑AGATCCCCAA‑CGGGGAAAACGAAATTCAATCCCGTCGGTAATGACG‑AAAGGCAg                                             <  1:1166859/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAg                                             <  1:1425540/140‑1 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGTGGCATAACAAAAAACTCCTTGTCCGG‑AGAACCCCCA‑CGGGGGAAAAGAAAATCAAAACCGCCGGTAATGACG‑AAAGGCAg                                             >  2:765537/1‑140 (MQ=255)
                                                                                      tCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAAAGGGGCATAAAAAACAAATCCTTGTCCGG‑AGAACCCCAA‑CGGGGGAAACGAAATTCAATACCGTCGGTAATGAAG‑AAAGGCAg                                             >  2:1199579/1‑140 (MQ=255)
                                                                                        aTACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGt                                           <  2:69565/140‑1 (MQ=255)
                                                                                         tACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTg                                          <  1:1860603/140‑1 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGGAAAAAAAAAACGTGG‑AGAAAAAAAAAACCCTTGTCCGG‑GGAACCCCCA‑CGGGGAAAACGGAATTTAAAAACGTCCGTAATGAAG‑AAAAGCAgggggg                                        >  2:1352430/1‑136 (MQ=255)
                                                                                           cAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTgag                                        <  1:1809577/140‑1 (MQ=255)
                                                                                            aaaaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAGCTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTgaga                                       <  1:1483634/140‑1 (MQ=255)
                                                                                              aaTCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAg                                     <  2:1221845/140‑1 (MQ=255)
                                                                                                    cGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAAAAGGGCATAAAAAAAAAATCCCTGTCCGG‑AGAACCCCCA‑CGGGGAAAAAGAAAATCAATAACCTCGGGAATGACG‑AAAAGCAGGGGGGAAAGGGAAc                               >  2:423946/1‑140 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACga                             <  2:1858823/140‑1 (MQ=255)
                                                                                                      ccATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GGAAAAAAACAAGGCATAACAAACAACTCCTTGTCCGG‑AGGACCCCAA‑CAGGGGAAACGAAAATCAATACCGTCCGGAATGACG‑AAAGGCAGGGGAGGAGGGGAAcca                             >  2:403984/1‑138 (MQ=255)
                                                                                                       cATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACgag                            <  2:1042024/140‑1 (MQ=255)
                                                                                                          cGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTTTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACt                         >  1:130047/1‑140 (MQ=255)
                                                                                                                  aCAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGt                 <  2:1565917/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt              <  1:461677/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACt              <  1:795198/140‑1 (MQ=255)
                                                                                                                     gCGTGGCGGCATGGCGG‑GGAAAAAAAAGTGGCATAACAAAAAACTCCCTGTCCCG‑GGAACCCCAA‑CGGGGGAAAAGAAAATCAAAAACGTCGGGAATGACG‑AAAAGGAGGGGAGAAGGGCAAAGAGACTGCAAAAGTACt              >  2:1398697/1‑140 (MQ=255)
                                                                                                                           cggcATGGCGG‑GTAAAAAAAAGTGGGCTAAAAAAAAAATCCTTGTCCGG‑GGAAACCCCA‑CGGGGGAAACGAAAATCAATAACCTCGGGAAAGACGAAAAGGAGGGGGGGAAGGGAAAC‑AGACTGCAAAAGTACTGAAatt        >  2:461677/1‑140 (MQ=255)
                                                                                                                           cggcATGGCGG‑GGAAAAAAAAGTGGCATAAAAAAAAACTCCTTGTCCGG‑AGAACCCCCA‑CGGGGGAAACG‑AATTCAATACCCGCGGGAAAGAAG‑AAAAGCAGGGGGGAAGGGGAACGAGACCGCAAAAGTACTGAAattt       >  2:688616/1‑139 (MQ=255)
                                                                                                                                 ggCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTa  <  2:1266951/140‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                        
GGGCCAGACTGACATCGGCATTAAAATCACGTACCACATTAATGATCCCAGGCTGGATCAGATCCGTCGACAGATACGCAGCAAAGTCATACAAAATCAACGCCATCGGGAAAAACAGCGTGGCGGCATGGCGG‑GTAAAAAAACGTGGCATAACAAACAACTCCTTGTCCGG‑AGAACCCCAA‑CGGGGAAAACGAAATTCAATACCGTCGGTAATGACG‑AAAGGCAGGTGAGAAGGGCAACGAGACTGCAAATGTACTGAATTTCATGTA  >  NC_000913/4568369‑4568637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑