BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	239,955	Δ2 bp	coding (234‑235/771 nt)	yafV ←	2‑oxoglutaramate amidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	239,955	0	C	.	100.0%	1023.9 / NA	234	coding (235/771 nt)	yafV	2‑oxoglutaramate amidase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (118/116); total (118/116)
*	NC_000913	239,956	0	T	.	100.0%	1023.9 / NA	234	coding (234/771 nt)	yafV	2‑oxoglutaramate amidase
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (118/116); total (118/116)

Only 100 of 236 total aligned reads displayed.

GCTTTATAATGTAGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGCCTGCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATCGCG  >  NC_000913/239825‑240087

||

    tataATGTAGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCAtt                                                                                                                       >  2:1596275/1‑140 (MQ=255)

          gTAGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActg                                                                                                                 >  2:2293949/1‑140 (MQ=255)

           tAGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActgc                                                                                                                <  1:436916/140‑1 (MQ=255)

           tAGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGGTTGAAATGCAACACTGC‑‑GCAAGCAGCGCATTGCActgc                                                                                                                >  1:2092710/1‑140 (MQ=255)

            aGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActgct                                                                                                               >  2:2699054/1‑140 (MQ=255)

            aGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActgct                                                                                                               >  2:596562/1‑140 (MQ=255)

            aGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActgct                                                                                                               >  2:561226/1‑140 (MQ=255)

            aGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActgc                                                                                                                >  1:1684741/1‑139 (MQ=255)

            aGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCAc                                                                                                                   <  1:344617/136‑1 (MQ=255)

              aTGCTCATCTGCCATGTGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  2:658657/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCActgctg                                                                                                              <  1:2114789/139‑1 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  2:493262/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  2:25909/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  1:2245562/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  2:1705482/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  1:432318/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  1:996476/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  1:1303056/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  1:1313159/1‑140 (MQ=255)

              aTGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACtgctgc                                                                                                             >  1:1459828/1‑140 (MQ=255)

                gCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTgcgc                                                                                                           >  1:1820540/1‑140 (MQ=255)

                gCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTgcgc                                                                                                           >  2:71411/1‑140 (MQ=255)

                gCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTgcgc                                                                                                           >  1:2547582/1‑140 (MQ=255)

                  tCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCt                                                                                                         <  2:960525/140‑1 (MQ=255)

                  tCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCt                                                                                                         <  2:1442346/140‑1 (MQ=255)

                     tCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAg                                                                                                      >  2:2613132/1‑140 (MQ=255)

                          cATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTc                                                                                                 <  1:561226/140‑1 (MQ=255)

                           aTGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCa                                                                                                <  2:2547582/140‑1 (MQ=255)

                            tGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCAt                                                                                               >  1:2687831/1‑140 (MQ=255)

                              cGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATcc                                                                                             >  2:1507364/1‑140 (MQ=255)

                               ggAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCa                                                                                            <  2:579929/140‑1 (MQ=255)

                                gAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAg                                                                                           <  1:1596275/140‑1 (MQ=255)

                                 aaCAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGt                                                                                          >  1:2456809/1‑140 (MQ=255)

                                   cAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTc                                                                                        >  2:2099193/1‑140 (MQ=255)

                                    aGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCa                                                                                       <  1:1893025/140‑1 (MQ=255)

                                    aGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCa                                                                                       <  1:2432525/140‑1 (MQ=255)

                                    aGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCa                                                                                       <  1:1753510/140‑1 (MQ=255)

                                      aTGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACt                                                                                     <  1:2613132/140‑1 (MQ=255)

                                      aTGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACt                                                                                     <  2:912893/140‑1 (MQ=255)

                                      aTGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACt                                                                                     <  2:1243786/140‑1 (MQ=255)

                                      aTGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACt                                                                                     >  2:1166123/1‑140 (MQ=255)

                                         aCGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACg                                                                                  <  2:2443696/140‑1 (MQ=255)

                                         aCGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACg                                                                                  <  1:658657/140‑1 (MQ=255)

                                           gCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTc                                                                                >  1:1233612/1‑140 (MQ=255)

                                              tATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATc                                                                             >  2:2656663/1‑140 (MQ=255)

                                                tCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCtt                                                                           >  2:1125814/1‑140 (MQ=255)

                                                tCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCtt                                                                           >  1:726620/1‑140 (MQ=255)

                                                tCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCAT‑CAGTTCACTACGTCATCTtg                                                                          >  1:2601927/1‑140 (MQ=255)

                                                   tAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTtgtg                                                                        <  2:447966/140‑1 (MQ=255)

                                                         tGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGcg                                                                  >  2:1645198/1‑140 (MQ=255)

                                                         tGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGcg                                                                  >  2:2624093/1‑140 (MQ=255)

                                                          gTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGcga                                                                 <  2:430354/140‑1 (MQ=255)

                                                          gTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGcga                                                                 <  2:1206693/140‑1 (MQ=255)

                                                           tACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCt                                                                      >  2:1304856/1‑134 (MQ=255)

                                                           tACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGcgac                                                                >  1:820276/1‑140 (MQ=255)

                                                           tACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGcgac                                                                >  1:2524444/1‑140 (MQ=255)

                                                              cGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGaa                                                             >  2:1871552/1‑140 (MQ=255)

                                                                tGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAg                                                            <  1:2745924/139‑1 (MQ=255)

                                                                tGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGc                                                           >  1:2103454/1‑140 (MQ=255)

                                                                tGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGc                                                           >  2:307534/1‑140 (MQ=255)

                                                                  ccgccCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTg                                                         >  2:2201108/1‑140 (MQ=255)

                                                                  ccgccCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTg                                                         >  1:952901/1‑140 (MQ=255)

                                                                    gccCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGcc                                                       <  1:1941968/140‑1 (MQ=255)

                                                                    gccCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGcc                                                       <  1:790255/140‑1 (MQ=255)

                                                                         gCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTc                                                  <  1:281148/140‑1 (MQ=255)

                                                                          cTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTcc                                                 >  1:374388/1‑140 (MQ=255)

                                                                           tCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCa                                                <  2:2166954/140‑1 (MQ=255)

                                                                               ccAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGc                                            <  1:1708476/140‑1 (MQ=255)

                                                                                  gCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCaaa                                         <  1:1166123/140‑1 (MQ=255)

                                                                                     aaaaGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGcc                                      <  2:452651/140‑1 (MQ=255)

                                                                                     aaaaGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGcc                                      <  2:2316086/140‑1 (MQ=255)

                                                                                      aaaGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCg                                     <  2:374388/140‑1 (MQ=255)

                                                                                       aaGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGc                                    <  1:448737/140‑1 (MQ=255)

                                                                                       aaGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGc                                    <  1:2168412/140‑1 (MQ=255)

                                                                                       aaGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGc                                    <  2:1723675/140‑1 (MQ=255)

                                                                                          cGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTgg                                 <  2:2069795/140‑1 (MQ=255)

                                                                                             ttAACCGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTaa                              <  2:1820540/140‑1 (MQ=255)

                                                                                                 ccGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACAt                          <  1:2348449/140‑1 (MQ=255)

                                                                                                 ccGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACAt                          <  1:1507364/140‑1 (MQ=255)

                                                                                                 ccGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACAt                          <  1:1908628/140‑1 (MQ=255)

                                                                                                 ccGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACAt                          <  2:1314262/140‑1 (MQ=255)

                                                                                                 ccGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACAt                          <  2:295563/140‑1 (MQ=255)

                                                                                                 ccGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCCGCCGCTTCCATGGCAAAGCCGCTGGTAAACAt                          <  2:1526159/140‑1 (MQ=255)

                                                                                                  cGAACCAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACAtc                         <  2:2524444/140‑1 (MQ=255)

                                                                                                      ccAGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCg                     <  1:1528132/140‑1 (MQ=255)

                                                                                                        aGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGGGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGt                   <  1:618876/140‑1 (MQ=255)

                                                                                                        aGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCTGTAGCTGTCATCCAGTTCGCTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTGCCATGGCAAAGCCGCTGGTAAACATCCCCGGt                   <  2:1894241/140‑1 (MQ=255)

                                                                                                        aGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGt                   <  1:2315383/140‑1 (MQ=255)

                                                                                                        aGACTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGt                   <  2:1897074/140‑1 (MQ=255)

                                                                                                          aCTCCGTTTGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAg                 <  2:1533689/140‑1 (MQ=255)

                                                                                                                 ttGTAATGCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATc          >  1:1151262/1‑140 (MQ=255)

                                                                                                                        gCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGt                   <  2:1402421/124‑1 (MQ=255)

                                                                                                                        gCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGt                   >  1:1402421/1‑124 (MQ=255)

                                                                                                                        gCAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgc   >  2:1958719/1‑140 (MQ=255)

                                                                                                                         cAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgcg  <  1:1125814/140‑1 (MQ=255)

                                                                                                                         cAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgcg  <  1:197933/140‑1 (MQ=255)

                                                                                                                         cAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgcg  <  1:1645198/140‑1 (MQ=255)

                                                                                                                         cAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgcg  <  2:1459828/140‑1 (MQ=255)

                                                                                                                         cAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgcg  <  2:827371/140‑1 (MQ=255)

                                                                                                                         cAACACTGC‑‑GCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATcgcg  <  1:2497363/140‑1 (MQ=255)

||

GCTTTATAATGTAGATGCTCATCTGCCATGCGGAACAGATGACGCTTATCATAAAAATGTACCGTGCCGCCCGGCTCAACCAGCAAAAAGCGGTTAACCGAACCAGACTCCGTTTGTAATGCAACACTGCCTGCAATCAGCGCATTGCACTGCTGCGCCTTAGCTGTCATCCAGTTCACTACGTCATCTTGTGCTAGCGACGAAGCTGCCGCTTCCATGGCAAAGCCGCTGGTAAACATCTCCGGTAGAACGATCACATCGCG  >  NC_000913/239825‑240087

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`