Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,815,883 +C coding (667/687 nt) rph ← truncated RNase PH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,815,8791.C97.1% 252.3 / ‑0.5 70coding (671/687 nt)rphtruncated RNase PH
Reads supporting (aligned to +/- strand):  ref base . (1/1);  new base C (28/40);  total (29/41)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.92e-01

CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGT  >  NC_000913/3815741‑3816011
                                                                                                                                             |                                                                                                                                    
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c                                                                                                                                     <  1:1179615/140‑1 (MQ=255)
cAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c                                                                                                                                     <  2:225484/140‑1 (MQ=255)
  aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑ccc                                                                                                                                   >  1:1671782/1‑140 (MQ=255)
  aTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑ccc                                                                                                                                   <  1:1132953/140‑1 (MQ=255)
     aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑ccccct                                                                                                                                <  2:1671782/140‑3 (MQ=255)
        tGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑ccccctcgg                                                                                                                             >  1:447854/1‑135 (MQ=255)
         ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c                                                                                                                                     >  1:1606810/1‑131 (MQ=255)
         ggCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga‑t‑t‑c                                                                                                                                     <  2:1606810/131‑1 (MQ=255)
          gcgcTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGc                                                                                                                            <  1:307368/140‑1 (MQ=255)
             cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCag                                                                                                                         >  2:538191/1‑140 (MQ=255)
             cTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCag                                                                                                                         <  1:141909/140‑1 (MQ=255)
              tGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGAC‑AAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCagag                                                                                                                       <  2:1440845/140‑1 (MQ=255)
                atatGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGc                                                                                                                      >  1:1536271/1‑140 (MQ=255)
                       ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAg                                                                                                               <  1:532416/140‑1 (MQ=255)
                       ttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAg                                                                                                               <  2:1489734/140‑1 (MQ=255)
                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGcc                                                                                                                           <  2:520414/125‑1 (MQ=255)
                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGcc                                                                                                                           >  1:520414/1‑125 (MQ=255)
                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATg                                                                                                            >  1:899097/1‑140 (MQ=255)
                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATg                                                                                                            >  1:324402/1‑140 (MQ=255)
                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATg                                                                                                            >  1:913393/1‑140 (MQ=255)
                          aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATg                                                                                                            >  2:706609/1‑140 (MQ=255)
                           tGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGa                                                                                                           <  2:447854/140‑1 (MQ=255)
                               ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                       <  2:324402/140‑1 (MQ=255)
                               ttCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAg                                                                                                       <  2:913393/140‑1 (MQ=255)
                                 cGCTCCTCATCTTACTTTTCTACAGACAAATAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGct                                                                                                     >  1:1224367/1‑140 (MQ=255)
                                 cGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGct                                                                                                     <  1:538191/140‑1 (MQ=255)
                                    tcctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCtt                                                                                                  <  1:706609/140‑1 (MQ=255)
                                       tcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCAt                                                                                               >  1:1524141/1‑140 (MQ=255)
                                         aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGa                                                                                                           <  2:724935/126‑1 (MQ=255)
                                         aTCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGa                                                                                                           >  1:724935/1‑126 (MQ=255)
                                            ttACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTg                                                                                          >  2:1188188/1‑140 (MQ=255)
                                                 tttCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑T‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACgg                                                                                     >  2:448741/1‑140 (MQ=255)
                                                       cAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGcc                                                                               <  1:1388670/140‑1 (MQ=255)
                                                                 aaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGTCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGTCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTc                                                                     <  2:692712/140‑1 (MQ=255)
                                                                    ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                                  >  1:122673/1‑140 (MQ=255)
                                                                    ggCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTcccc                                                                  >  2:1459071/1‑140 (MQ=255)
                                                                      cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                <  2:899097/140‑1 (MQ=255)
                                                                      cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                <  1:1075288/140‑1 (MQ=255)
                                                                      cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTg                                                                <  1:429735/140‑1 (MQ=255)
                                                                         cTCATCAGTCGCCTTAAAAATCAGTTTGCCATCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCAc                                                             >  2:1474967/1‑140 (MQ=255)
                                                                            atcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTc                                                          >  2:576566/1‑140 (MQ=255)
                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                   >  1:881157/1‑140 (MQ=255)
                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                   >  1:1047500/1‑140 (MQ=255)
                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                   >  2:688517/1‑140 (MQ=255)
                                                                                   gCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAatgatg                                                   >  1:1279502/1‑140 (MQ=255)
                                                                                      ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                                >  1:1135474/1‑140 (MQ=255)
                                                                                      ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                                >  2:430565/1‑140 (MQ=255)
                                                                                      ttAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATgcgc                                                <  2:1494299/140‑1 (MQ=255)
                                                                                       tAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGcc                                               <  1:1459071/140‑1 (MQ=255)
                                                                                              cAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                        <  1:588858/140‑1 (MQ=255)
                                                                                              cAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                        <  1:576566/140‑1 (MQ=255)
                                                                                               aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                       >  2:839382/1‑140 (MQ=255)
                                                                                               aGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                       >  1:1357729/1‑140 (MQ=255)
                                                                                                 tttGCCATCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                     <  1:1474967/140‑1 (MQ=255)
                                                                                                 tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                     <  2:1135474/140‑1 (MQ=255)
                                                                                                 tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                     <  2:966430/140‑1 (MQ=255)
                                                                                                 tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGt                                     >  1:966430/1‑140 (MQ=255)
                                                                                                  ttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtc                                    <  2:1224367/140‑1 (MQ=255)
                                                                                                   tGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                   <  2:1357729/140‑1 (MQ=255)
                                                                                                   tGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                   <  1:1329835/140‑1 (MQ=255)
                                                                                                    gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATT‑T‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                  <  1:448741/140‑1 (MQ=255)
                                                                                                    gCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                  <  2:1524141/140‑1 (MQ=255)
                                                                                                       aGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                               <  2:1536271/140‑1 (MQ=255)
                                                                                                       aGCGCCGCCTTCGGCGTCGCTACAATGGATTCGA‑TCC‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                               <  2:653165/140‑1 (MQ=255)
                                                                                                        gcgcCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                              <  1:939600/140‑1 (MQ=255)
                                                                                                            cgccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                          <  1:1188188/140‑1 (MQ=255)
                                                                                                            cgccTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                          <  1:839382/140‑1 (MQ=255)
                                                                                                               cTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                   <  2:1108876/128‑1 (MQ=255)
                                                                                                               cTTCTGCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtca                                   >  1:1108876/1‑128 (MQ=255)
                                                                                                                    gCGTCGCTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                  <  1:688517/140‑1 (MQ=255)
                                                                                                                          cTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                >  2:973849/1‑136 (MQ=255)
                                                                                                                          cTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                >  2:47981/1‑136 (MQ=255)
                                                                                                                          cTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                <  1:973849/136‑1 (MQ=255)
                                                                                                                          cTACAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                <  1:47981/136‑1 (MQ=255)
                                                                                                                             cAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg         >  1:595739/1‑140 (MQ=255)
                                                                                                                             cAATGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg         <  1:558658/140‑1 (MQ=255)
                                                                                                                               aTGGATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc       <  2:728905/140‑1 (MQ=255)
                                                                                                                                 ggATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag     <  2:1279502/140‑1 (MQ=255)
                                                                                                                                 ggATTCGA‑T‑TCCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCag     <  2:881157/140‑1 (MQ=255)
                                                                                                                                    ttcga‑t‑tcCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGt  >  1:125652/1‑140 (MQ=255)
                                                                                                                                     tcga‑t‑tcCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                  <  2:864482/123‑1 (MQ=255)
                                                                                                                                     tcga‑t‑tcCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCg                  >  1:864482/1‑123 (MQ=255)
                                                                                                                                             |                                                                                                                                    
CAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGA‑T‑T‑CCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGT  >  NC_000913/3815741‑3816011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑