BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,637,726	(T)_8→7	coding (57/174 nt)	gnsB ←	Qin prophage; protein GnsB

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,637,719	0	T	.	100.0%	374.1 / NA	89	coding (64/174 nt)	gnsB	Qin prophage; protein GnsB
Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (42/47); total (42/47)

Only 100 of 103 total aligned reads displayed.

TATGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAATTTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATTATATGGTGCAAACGTGTAAAA  >  NC_000913/1637582‑1637854

tATGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAttt                                                                                                                                       >  2:842788/1‑140 (MQ=255)

 aTGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAtttt                                                                                                                                      >  1:858453/1‑140 (MQ=255)

  tGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAttttt                                                                                                                                     <  2:858453/140‑1 (MQ=255)

  tGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAttttt                                                                                                                                     <  2:1226770/140‑1 (MQ=255)

  tGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAttttt                                                                                                                                     <  2:14106/140‑1 (MQ=255)

    gATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAttttttt                                                                                                                                   <  1:649957/140‑1 (MQ=255)

      tAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAtttttttgt                                                                                                                                 >  2:2058733/1‑138 (MQ=255)

      tAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAtttttttgt                                                                                                                                 <  2:1099195/140‑3 (MQ=255)

       aaaTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAtttttttgtt                                                                                                                                >  2:394082/1‑137 (MQ=255)

        aaTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAtttttttgtta                                                                                                                               >  2:407489/1‑136 (MQ=255)

        aaTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAAtttttttgtta                                                                                                                               >  1:1663660/1‑136 (MQ=255)

         aTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTtat                                                                                                                             <  2:729748/140‑1 (MQ=255)

         aTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTtat                                                                                                                             <  2:1351822/140‑1 (MQ=255)

         aTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTtat                                                                                                                             <  1:1066356/140‑1 (MQ=255)

         aTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTtat                                                                                                                             <  1:842788/140‑1 (MQ=255)

         aTTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTtat                                                                                                                             <  1:803506/140‑1 (MQ=255)

             tattatTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTatatat                                                                                                                         <  2:447242/140‑1 (MQ=255)

              attattGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATAtt                                                                                                                        >  1:1752459/1‑140 (MQ=255)

              attattGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCA‑TTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTc                                                                                                                       <  2:1074154/140‑1 (MQ=255)

               ttattGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTc                                                                                                                       >  1:2112940/1‑140 (MQ=255)

                 attGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAg                                                                                                                     <  1:407489/140‑1 (MQ=255)

                       tACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAatat                                                                                                               <  1:557204/140‑1 (MQ=255)

                           tCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATAtctgc                                                                                                           <  2:1307168/140‑1 (MQ=255)

                            cAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATAtctgct                                                                                                          >  2:1044550/1‑140 (MQ=255)

                              acagaaattaaTCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATAtctgcttc                                                                                                        <  1:1870487/136‑1 (MQ=255)

                               attaaattaaTCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATAtctgcttct                                                                                                       >  2:1542338/1‑140 (MQ=255)

                               attaaattaaTCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATAtctgcttct                                                                                                       >  1:684944/1‑140 (MQ=255)

                                 taaattaaTCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATAtctgcttctgc                                                                                                     >  2:1483092/1‑140 (MQ=255)

                                   aattaaTCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATctgcttctgctt                                                                                                   <  2:2112940/140‑1 (MQ=255)

                                        aTCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGtt                                                                                              >  2:2072664/1‑140 (MQ=255)

                                         tCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGttt                                                                                             >  1:325237/1‑140 (MQ=255)

                                         tCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGttt                                                                                             >  1:540556/1‑140 (MQ=255)

                                         tCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGCGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGttt                                                                                             >  2:1824659/1‑140 (MQ=255)

                                             gACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTaa                                                                                         <  1:1542338/140‑1 (MQ=255)

                                             gACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGCTCAATAA‑TGTTTTTCTTATATATTCAGACATATCTGCTTCTGCTTTTGtttctgt                                                                                         >  2:1870487/1‑136 (MQ=255)

                                                   atAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTc                                                                                   >  1:1077018/1‑140 (MQ=255)

                                                        tttCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAatat                                                                              <  1:2072664/140‑1 (MQ=255)

                                                        tttCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAatat                                                                              <  1:2017245/140‑1 (MQ=255)

                                                         ttCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATAtt                                                                             >  2:396567/1‑140 (MQ=255)

                                                          tCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGt                                                                                       <  1:552435/129‑1 (MQ=255)

                                                          tCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGt                                                                                       >  2:552435/1‑129 (MQ=255)

                                                          tCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATtc                                                                            >  2:284244/1‑140 (MQ=255)

                                                          tCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATtc                                                                            <  2:1529848/140‑1 (MQ=255)

                                                           cAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATtca                                                                           <  2:1752459/140‑1 (MQ=255)

                                                           cAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATtca                                                                           >  1:1368870/1‑140 (MQ=255)

                                                            aaGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCa                                                                                  <  1:1756574/132‑1 (MQ=255)

                                                            aaGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCa                                                                                  >  2:1756574/1‑132 (MQ=255)

                                                            aaGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATtcat                                                                          >  2:1538106/1‑140 (MQ=255)

                                                            aaGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑‑TTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATtcatc                                                                         >  2:380317/1‑140 (MQ=255)

                                                                  cGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTc                                                                    <  2:1712812/140‑1 (MQ=255)

                                                                  cGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTc                                                                    <  2:540556/140‑1 (MQ=255)

                                                                   gTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTcc                                                                   >  1:1674078/1‑140 (MQ=255)

                                                                   gTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTcc                                                                   <  2:1674078/140‑1 (MQ=255)

                                                                   gTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTc                                                                    <  1:1246603/139‑1 (MQ=255)

                                                                   gTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTc                                                                    >  2:1246603/1‑139 (MQ=255)

                                                                    tCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCct                                                                  >  2:586132/1‑140 (MQ=255)

                                                                    tCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCct                                                                  >  2:81290/1‑140 (MQ=255)

                                                                         ttttCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCtttt                                                             >  2:193540/1‑140 (MQ=255)

                                                                           ttCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAg                                                           <  2:406150/140‑1 (MQ=255)

                                                                           ttCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAg                                                           <  1:396567/140‑1 (MQ=255)

                                                                           ttCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAg                                                           <  1:586132/140‑1 (MQ=255)

                                                                           ttCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAg                                                           <  1:1483092/140‑1 (MQ=255)

                                                                                 tGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCct                                                                  >  2:71014/1‑127 (MQ=255)

                                                                                 tGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCct                                                                  <  1:71014/127‑1 (MQ=255)

                                                                                  gCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTa                                                    >  2:1993373/1‑140 (MQ=255)

                                                                                   cGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTAt                                                   <  1:1910606/140‑1 (MQ=255)

                                                                                      tAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGAc                                                <  1:394082/140‑1 (MQ=255)

                                                                                        aaCTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACtt                                              >  2:597550/1‑140 (MQ=255)

                                                                                             aaTACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAg                                         >  1:1588385/1‑140 (MQ=255)

                                                                                             aaTACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAg                                         >  2:733805/1‑140 (MQ=255)

                                                                                               tACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGtt                                       <  2:698892/140‑1 (MQ=255)

                                                                                               tACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGtt                                       >  1:1193258/1‑140 (MQ=255)

                                                                                                aCTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTa                                      <  1:597550/140‑1 (MQ=255)

                                                                                                  tGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTaca                                    <  1:1044550/140‑1 (MQ=255)

                                                                                                  tGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTaca                                    >  1:1055271/1‑140 (MQ=255)

                                                                                                    gTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACtt                                              <  2:1027837/128‑1 (MQ=255)

                                                                                                    gTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACtt                                              >  1:1027837/1‑128 (MQ=255)

                                                                                                    gTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTAcaca                                  >  1:1806081/1‑140 (MQ=255)

                                                                                                    gTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTAcaca                                  >  2:1824833/1‑140 (MQ=255)

                                                                                                    gTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTAcaca                                  >  1:980049/1‑140 (MQ=255)

                                                                                                    gTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTAcaca                                  >  2:1883008/1‑140 (MQ=255)

                                                                                                      aaCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGt                                <  2:453987/140‑1 (MQ=255)

                                                                                                      aaCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGt                                <  1:193540/140‑1 (MQ=255)

                                                                                                      aaCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGt                                <  1:81290/140‑1 (MQ=255)

                                                                                                      aaCTTCTTTCCCGGTCCTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGt                                <  1:1108807/140‑1 (MQ=255)

                                                                                                       aCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGt                                <  1:121686/139‑1 (MQ=255)

                                                                                                       aCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGt                                >  2:121686/1‑139 (MQ=255)

                                                                                                       aCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTa                               >  2:1118396/1‑140 (MQ=255)

                                                                                                       aCTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTa                               >  1:815705/1‑140 (MQ=255)

                                                                                                        cttcttTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTaa                              <  1:733805/140‑1 (MQ=255)

                                                                                                        cttcttTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTaa                              <  2:815705/140‑1 (MQ=255)

                                                                                                         ttcttTCCCGGTCTTTTTCTTAAGTTCAATAA‑‑TTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGt                            <  1:380317/140‑1 (MQ=255)

                                                                                                          tcttTCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGt                            <  1:1538106/140‑1 (MQ=255)

                                                                                                            tttCCCGGTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTaa                              <  1:1684129/136‑1 (MQ=255)

                                                                                                                  ggTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATtata                    <  2:1193258/140‑1 (MQ=255)

                                                                                                                   gTCTTTTTCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATTatat                   >  2:1625362/1‑140 (MQ=255)

                                                                                                                          tcatAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTATCTTTAAGTTTTCAAAAGACATCATTTCCTCTTCTAGTCTTTTATGGTTATCCAGTCGCACGGTAAGTCGATTATATGATGCaa            <  2:1519164/137‑1 (MQ=255)

                                                                                                                          tCTTAAGTTCAATAA‑TTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATTATATGGTGCaa            <  2:1033480/140‑1 (MQ=255)

                                                                                                                                    aataa‑tTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATTATATGGTGCAAACGTGTaaaa  >  1:145715/1‑140 (MQ=255)

                                                                                                                                    aataa‑tTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATTATATGGTGCAAACGTGTaaaa  >  2:1881056/1‑140 (MQ=255)

TATGGATAAATTTTATTATTGAATACATCAGATTAAATTAATCTTGACATCATAGCTTTCAAGACCCGTCATTTTTTCCCGTGCGGTAAACTGAATACTGGTAACTTCTTTCCCGGTCTTTTTCTTAAGTTCAATAATTTTTTTTGTTATATATTCAGAAATATCTGCTTCTGCTTTTGTTTTTAAGTTTTCAATATTCATCATTTCCTCTTTTAGTCTGTTATGACTTTCCAGTTACACAGTAAGTCGATTATATGGTGCAAACGTGTAAAA  >  NC_000913/1637582‑1637854

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`