Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
JC JC	NC_000913	568,908	IS2 (–) +5 bp	coding (7‑11/1527 nt)	ybcK →	DLP12 prophage; putative recombinase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	381260 =	NA (NA)	94 (1.840)	49/272	0.1	100%	noncoding (1/1331 nt)	IS2	repeat region
	?	NC_000913	568908 =	0 (0.000)					coding (7/1527 nt)	ybcK	DLP12 prophage; putative recombinase
*	?	NC_000913	= 382590	NA (NA)	84 (1.630)	52/274	0.0	100%	noncoding (1331/1331 nt)	IS2	repeat region
	?	NC_000913	= 568912	0 (0.000)					coding (11/1527 nt)	ybcK	DLP12 prophage; putative recombinase

TGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/382453‑382590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATATACAACAATAATCGTAT  <  NC_000913/568912‑568782                                                                                                                                                                                                                                                                               TGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCTAATCCAGC                                                                                                                                   >  2:144488/1‑140   CAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTT                                                                                                                                 >  2:846564/1‑140      AGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTT                                                                                                                              >  2:699987/1‑140       GGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTT                                                                                                                             <  2:265658/140‑1        GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTC                                                                                                                            <  2:677412/140‑1        GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTC                                                                                                                            >  2:266793/1‑140        GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTC                                                                                                                            <  1:846564/140‑1        GCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTC                                                                                                                            >  1:452355/1‑140           TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATG                                                                                                                         >  2:605526/1‑140           TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATG                                                                                                                         >  2:736799/1‑140           TTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATG                                                                                                                         <  2:112895/140‑1               AGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGA                                                                                                                     <  1:859146/140‑1                GCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGAC                                                                                                                    <  1:243978/140‑1                  ATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACAC                                                                                                                  <  1:731928/140‑1                     ATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTG                                                                                                               <  2:190171/140‑1                           AATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGAC                                                                                                                    <  1:410016/129‑1                           AATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGAC                                                                                                                    >  2:410016/1‑129                            ATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGT                                                                                                        >  2:310248/1‑140                             TGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTA                                                                                                       <  1:69078/140‑1                             TGGCATCCGCATAGTGCGATGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTA                                                                                                       >  2:289169/1‑140                              GGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTAT                                                                                                      >  1:228050/1‑140                              GGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGC                                                                                                              <  2:205437/132‑1                              GGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGC                                                                                                              >  1:205437/1‑132                                CATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGC                                                                                                    <  1:712892/140‑1                                CATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGC                                                                                                    <  2:198187/140‑1                                CATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGC                                                                                                    <  1:712009/140‑1                                CATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGC                                                                                                    <  2:449843/140‑1                                  TCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTT                                                                                                  >  1:524747/1‑140                                     GCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTA                                                                                               <  1:546874/140‑1                                      CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGC                                                                                                    >  1:288980/1‑134                                      CATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGC                                                                                                    <  2:288980/134‑1                                       ATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATA                                                                                             <  1:289169/140‑1                                       ATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATA                                                                                             <  1:266793/140‑1                                       ATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATA                                                                                             <  2:660/140‑1                                           TGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACC                                                                                         >  1:784156/1‑140                                            GCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCT                                                                                        <  2:228050/140‑1                                            GCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCT                                                                                        <  1:736799/140‑1                                             CGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTT                                                                                       >  1:247108/1‑140                                               CTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAG                                                                                     <  1:699987/140‑1                                                  GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGG                                                                                  <  1:502309/140‑1                                                  GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGG                                                                                  <  1:169971/140‑1                                                  GGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGG                                                                                  <  2:452355/140‑1                                                     TATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGG                                                                               >  1:60397/1‑140                                                     TATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGG                                                                               >  1:223787/1‑140                                                            CGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAA                                                                        >  2:465599/1‑140                                                            CGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAA                                                                        >  2:319910/1‑140                                                            CGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAA                                                                        >  1:521065/1‑140                                                            CGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAA                                                                        >  1:192593/1‑140                                                            CGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGA                                                                             >  1:75168/1‑135                                                            CGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGA                                                                             <  2:75168/135‑1                                                            CGCCACGGAAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAA                                                                        >  1:136819/1‑140                                                               CACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTT                                                                     <  2:107325/140‑1                                                                       TATCTGCGGCAGCGGGCTTGTGATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTAT                                                             >  1:192080/1‑140                                                                       TATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTAT                                                             >  2:263183/1‑140                                                                           TGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTT                                                         <  2:136819/140‑1                                                                           TGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTT                                                         <  2:192593/140‑1                                                                             CGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTA                                                       >  2:709849/1‑140                                                                                  GCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAA                                                  <  1:310248/140‑1                                                                                   CGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAA                                                 >  1:311197/1‑140                                                                                   CGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAA                                                 >  1:683546/1‑140                                                                                            AATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATT                                        <  2:784156/140‑1                                                                                                GGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGG                                    >  2:470988/1‑140                                                                                                  TTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTC                                  >  1:97178/1‑140                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               <  2:60397/140‑1                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               <  2:97178/140‑1                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               >  2:327831/1‑140                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               <  2:247108/140‑1                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               >  2:431357/1‑140                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               <  1:263183/140‑1                                                                                                     AGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACA                               <  1:552172/140‑1                                                                                                         ATAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTAT                           <  2:524747/140‑1                                                                                                          TAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATC                          <  2:521065/140‑1                                                                                                          TAACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATC                          <  1:431357/140‑1                                                                                                            ACAGATGTCTGGAAATATAGGGGCTAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTT                        <  1:144488/140‑1                                                                                                            ACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTT                        <  1:605526/140‑1                                                                                                            ACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAAT                                         <  2:762369/123‑1                                                                                                            ACAGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAAT                                         >  1:762369/1‑123                                                                                                              AGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGA                      <  1:470988/140‑1                                                                                                              AGATGTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGA                      <  1:465599/140‑1                                                                                                                  GTCTGGAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATAT                  <  2:683546/140‑1                                                                                                                       GAAATATAGGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATATACAAC             >  2:133990/1‑140                                                                                                                               GGGGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATATACAACAATAATCG     >  1:728264/1‑140                                                                                                                                 GGCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATATACAACAATAATCGTA   >  1:822167/1‑140                                                                                                                                  GCAAATCCAGCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATATACAACAATAATCGTAT  >  2:825331/1‑140                                                                                                                                                                                                                                                                               TGCAGAGGCGTTCGAGCATTATAACGAATGGCATCCGCATAGTGCGCTGGGTTATCGCTCGCCACGGGAATATCTGCGGCAGCGGGCTTGTAATGGGTTAAGTGATAACAGATGTCTGGAAATATAGGGGCAAATCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/382453‑382590 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCTTTTTTCATGGTGACACCTGCTAACGTATGCTTTTATAAACCTTAGTGGTGGGATATAATTTTTGTTTATTTTTTATTTAAAAAGACAATTAAGGTCACATTATCTTGAATATACAACAATAATCGTAT  <  NC_000913/568912‑568782

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.